Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30840
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 231 2e-62
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 127 7e-31
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 113 1e-26
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 104 5e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 82 3e-17
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 68 4e-13
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 63 2e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 3e-10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 40 1e-04
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 0.76
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 3.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 4.1
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 5.4
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 5.4
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 24 7.1
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch... 24 9.4
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch... 24 9.4
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 24 9.4
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 24 9.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 231 bits (566), Expect = 2e-62
Identities = 106/123 (86%), Positives = 114/123 (92%)
Frame = -1
Query: 385 KSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANT 206
KSYELPDGQVITIGNERFR PEALFQPS LG+E+ GIHE YNSIMKCDVDIRKDLY N
Sbjct: 238 KSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNV 297
Query: 205 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 26
VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWI
Sbjct: 298 VMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWI 357
Query: 25 RRR 17
++
Sbjct: 358 SKQ 360
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 127 bits (306), Expect = 7e-31
Identities = 55/119 (46%), Positives = 82/119 (68%)
Frame = -1
Query: 382 SYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTV 203
+Y+LPD Q IT+G E F PE LF P +G E+ G+H ++ SI+ D+D+R LY+N V
Sbjct: 244 TYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIV 303
Query: 202 MSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 26
+SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I
Sbjct: 304 LSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLI 362
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 113 bits (271), Expect = 1e-26
Identities = 56/134 (41%), Positives = 87/134 (64%), Gaps = 12/134 (8%)
Frame = -1
Query: 385 KSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANT 206
++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E ++++I DVDIRK LY
Sbjct: 238 RNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAI 297
Query: 205 VMSGGTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWIGGSIL 59
V+SGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357
Query: 58 AS-LSTFQQMWIRR 20
A ++ MW+ +
Sbjct: 358 ADIMAQNDHMWVSK 371
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 104 bits (249), Expect = 5e-24
Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 11/134 (8%)
Frame = -1
Query: 385 KSYELPDGQVITIGNERFRCPEALFQPSFLGMESC---------GIHETVYNSIMKCDVD 233
K +E PDG G ERFR E LF PSF S G+HE VY SI+ CD +
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSE 338
Query: 232 IRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKII-APPERKYSVWIGGSIL 59
+R L N V++GGT++ PG+++R+Q E+ LA S I + +VW GGSIL
Sbjct: 339 LRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSIL 398
Query: 58 ASLSTFQQMWIRRR 17
ASL FQ +W+ ++
Sbjct: 399 ASLDNFQHLWVSKQ 412
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 82.2 bits (194), Expect = 3e-17
Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Frame = -1
Query: 280 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 101
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 100 ---PERKYSVWIGGSILASLSTFQQMWIRRR 17
ER Y+ W+GGSIL+SL TF Q+WI R+
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQ 415
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 68.1 bits (159), Expect = 4e-13
Identities = 32/89 (35%), Positives = 48/89 (53%)
Frame = -1
Query: 361 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTM 182
QV+ + NERF PE LF PS + + GI E V S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 181 YPGIADRMQKEITALAPSTIKIKIIAPPE 95
+PG R+ E+ +LAP+ ++K+ P +
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSD 360
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 62.9 bits (146), Expect = 2e-11
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Frame = -1
Query: 355 ITIGNERFRCPEALFQPSFLGMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 179
I +G ERF PE F P + + E V N + +D+RK LY N V+SGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 178 PGIADRMQKEITALAPSTI--------------KIKIIAPPERKYSVWIGGSILASLSTF 41
+R+Q+++ + I + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.8 bits (136), Expect = 3e-10
Identities = 27/107 (25%), Positives = 55/107 (51%)
Frame = -1
Query: 340 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 161
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 160 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWIRR 20
+++E+T++ P I + W G S + F+ + R
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTR 700
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 40.3 bits (90), Expect = 1e-04
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = -1
Query: 226 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 56
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 55 SLSTFQQMWIR 23
+ ++WI+
Sbjct: 587 RIRIVSELWIK 597
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.5 bits (58), Expect = 0.76
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 154 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWIRR 20
KEI++ A S I + + P E+ W ILA L+T RR
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTTVGNPPFRR 256
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 3.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 275 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 147
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 128 DHQDQDHRSPREEVLRMDRWIHPG 57
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 5.4
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = -1
Query: 358 VITIGNERFRCPEALFQPSFLGMESC-GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTM 182
++T+ NE + E L S S E+ + CD+D ++ + + T +
Sbjct: 136 LVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFTDDTNL 192
Query: 181 YPGIADRMQKEITALAPSTIKIKIIAPPERKYS 83
+P AD I ++K A RKYS
Sbjct: 193 FPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 87 YFLSGGAMILILMVEGARAVISFCILSAIPGY 182
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 232 IRKDLYANTVMSGGTTMYPGIADRMQKEI 146
I LY++ S T + GI DR++K +
Sbjct: 533 IYSSLYSSLNSSNSTVSFSGIFDRVEKSV 561
>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 23.8 bits (49), Expect = 9.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 15 FLLRIHICWKVDREARMDPPI 77
FLLR+HI W + + P+
Sbjct: 127 FLLRVHIMWTTGGDLPLSNPV 147
>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 209
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +3
Query: 180 YMVVPPDMTVLAYRSLRMSTSHFMMELYTVSW 275
++ + VL R + + T+H + LYT W
Sbjct: 15 FLPISISSAVLIEREINVPTTHVLQTLYTRFW 46
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 23.8 bits (49), Expect = 9.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2
Query: 72 VDPSWLPCPPSSRCGF 25
++ S PCP ++ CGF
Sbjct: 524 IEASCQPCPENAECGF 539
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 23.8 bits (49), Expect = 9.4
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 195 PDMTVLAYRSLRMSTSHFMMELYTVSWMPHDSIPRKEGWKRASGQ-RNLSLPM 350
P + L++ LR + +++ + + + IPR E WKRA+ + S+P+
Sbjct: 172 PGLIPLSFIQLRDLKTGAVIKDVSEAVLRISCIPRVEDWKRAAADYKKSSIPL 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,805
Number of Sequences: 5004
Number of extensions: 28116
Number of successful extensions: 123
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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