Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30840
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             250   3e-69
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.057
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.30 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   0.93 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   2.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   2.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   2.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   2.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   2.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   2.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   3.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   4.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   4.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   6.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   6.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   6.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   6.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   6.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   6.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   6.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   6.5  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  250 bits (613), Expect = 3e-69
 Identities = 115/120 (95%), Positives = 119/120 (99%)
 Frame = -1

Query: 385 KSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANT 206
           KSYELPDGQVITIGNERFRCPEALFQPSFLGME+CGIHET YNSIMKCDVDIRKDLYANT
Sbjct: 13  KSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANT 72

Query: 205 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 26
           V+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPE+KYSVWIGGSILASLSTFQQMWI
Sbjct: 73  VLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWI 132


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.057
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -3

Query: 218 VRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRM 78
           +++H H++ +HH    +    +  HRP     Q Q  +  R+E  R+
Sbjct: 138 LQRHHHLQNHHH--HLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRL 182


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -1

Query: 259 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSV 80
           N  +K D DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K  +
Sbjct: 342 NKELKYD-DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--I 396

Query: 79  WI 74
           WI
Sbjct: 397 WI 398


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 0.93
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -3

Query: 260 QLHHEVRRRHP*GPVRQHRH---VRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRSPREE 90
           Q+HH++  +HP    +Q +H    +  H     +    +   + +A   Q Q    PR++
Sbjct: 167 QMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPRQQ 226


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +3

Query: 228 RMSTSHFMMELYT--VSWMPHDSIPRKEGWKR 317
           R     F+  L T    W+ +++I RK  W R
Sbjct: 18  RSENDPFLKRLITGDEKWVVYNNIKRKRSWSR 49


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 103 PPERKYSVWIGGSILASLSTFQQMWIRRRNTTS 5
           PP+    + +G +IL SL+ F  +      TTS
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTS 251


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 103 PPERKYSVWIGGSILASLSTFQQMWIRRRNTTS 5
           PP+    + +G +IL SL+ F  +      TTS
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTS 251


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 103 PPERKYSVWIGGSILASLSTFQQMWIRRRNTTS 5
           PP+    + +G +IL SL+ F  +      TTS
Sbjct: 219 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTS 251


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 103 PPERKYSVWIGGSILASLSTFQQMWIRRRNTTS 5
           PP+    + +G +IL SL+ F  +      TTS
Sbjct: 287 PPDSGEKLTLGVTILLSLTVFLNLVAESMPTTS 319


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +3

Query: 228 RMSTSHFMMELYT--VSWMPHDSIPRKEGWKR 317
           R     F+  L T    W+ +++I RK  W R
Sbjct: 139 RNENDPFLKRLITGDEKWVVYNNIKRKRSWSR 170


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 260 QLHHEVRRRHP*GPVRQHR 204
           QL+ +V+  H   PV+QHR
Sbjct: 266 QLNSDVQPGHGSPPVKQHR 284


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 3   GLVVFLLRIHICWKVDREARMDPPIHTEYFLSG 101
           GL+V+    +  W++     M  P+  +Y + G
Sbjct: 216 GLIVYSWEQNRSWRITHSYFMPDPLAGDYNIGG 248


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 5   TRRIPPSNPH 34
           TR++PP +PH
Sbjct: 98  TRKLPPLHPH 107


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 245 LHDGVVHGLVDAARFHTQEG 304
           +H G +H  V   ++ TQ+G
Sbjct: 907 VHQGQIHLTVAVVQYKTQDG 926


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 104 SPREEVLRMDRWIHPGFPV 48
           +P  + + +  WIHP  P+
Sbjct: 531 NPLTDTVPIHTWIHPWLPL 549


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 188 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 72
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 188 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 72
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 188 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 72
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 188 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 72
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 188 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 72
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 188 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 72
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 188 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 72
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 188 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 72
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,626
Number of Sequences: 438
Number of extensions: 2357
Number of successful extensions: 23
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)