Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30837
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0048 + 7796372-7796674,7796969-7797169                           30   2.5  
03_01_0068 - 546475-546615,546709-546819,547449-547482,547582-54...    29   3.3  

>05_03_0048 + 7796372-7796674,7796969-7797169
          Length = 167

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -1

Query: 551 RPSGNPGQVEGS---AGSKACERLTRR 480
           RPSG+P  V GS   AG +AC   TRR
Sbjct: 36  RPSGDPAHVPGSELRAGQRACAGTTRR 62


>03_01_0068 -
           546475-546615,546709-546819,547449-547482,547582-547673,
           547904-548062,548178-548251,548477-548551,548820-548903,
           548981-549110
          Length = 299

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 757 PSGFYIFYIRTKGFKKKNNFSWYTWKSPNQFIYR*VVE 644
           P+G Y F +     + +N+  W   K+ NQ+I+R +VE
Sbjct: 95  PAGMYTFRMEMPVVEVRNHGLWLLAKNVNQYIHRVLVE 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,784,028
Number of Sequences: 37544
Number of extensions: 268491
Number of successful extensions: 598
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)