Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30836
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    27   0.15 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.26 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    25   0.45 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    24   1.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.0  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    23   3.2  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    23   3.2  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    22   4.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.3  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +1

Query: 298 LRGSGTPLAP----RSPIPNASATPFRTPSPLPPSWRGPES 408
           L G+ TPL      +  +P      F T   LPP W+G ES
Sbjct: 189 LNGAHTPLTDDHDEKYGVPTLEELGFDTEGRLPPVWQGGES 229


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 103 EPRNFGQRKVTPGTPAGRDLVRGDIIAKIDDYDARD 210
           EP   G   V+  TP    LVRG ++AK    DARD
Sbjct: 493 EPLYSGNLAVSVATPNDTSLVRGRLVAK-PVADARD 527


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
 Frame = +1

Query: 406 SLPRSTPVPPSQFQPQLDGEYRTYLLSP-SSTRTDETIDESIQSQPYRTTPLVLPGAKVR 582
           +LP ST     Q +   D   R  +  P ++  TD     SI      + PL  P     
Sbjct: 109 NLPESTIKVWFQNRRMKDKRQRMAIAWPYAAVYTDPAFAASIFHAAATSLPLHYPPPP-- 166

Query: 583 REPGPTESYLRHHPNPAMRAPP 648
             P  T  Y R+HP P    PP
Sbjct: 167 --PVYTHHYARYHPYPNFGVPP 186


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 335 PYPTQAPHHSGLQARCLRHGVVRNLCLAAHRCHLRNS----SHNWTANTEPICCR 487
           PY +   HH  LQAR  +         AA  C L +S    + N+++N++P C +
Sbjct: 47  PYASSQHHHHHLQARPPQDSPYDASVAAA--CKLYSSEGQQNSNYSSNSKPDCSK 99


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +1

Query: 349 SATPFRTPSPLPPSWRGPESLPRSTPVPPS 438
           S TP    SP PP        P   P P S
Sbjct: 36  SMTPNSAASPAPPEEEAASPTPGDVPTPSS 65



 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +1

Query: 304 GSGTPLAPRSPIP----NASATPFRTPSPLPP 387
           GS TP +  SP P     AS TP   P+P  P
Sbjct: 35  GSMTPNSAASPAPPEEEAASPTPGDVPTPSSP 66


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 502 TDETIDESIQSQPYRTTPLVLP 567
           TDET+ + ++S+P R   L +P
Sbjct: 250 TDETMIKCLKSRPARQIALTVP 271


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 502 TDETIDESIQSQPYRTTPLVLP 567
           TDET+ + ++S+P R   L +P
Sbjct: 250 TDETMIKCLKSRPARQIALTVP 271


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 502 TDETIDESIQSQPYRTTPLVLP 567
           TDET+   ++S+P R   L +P
Sbjct: 250 TDETMIRCLKSRPARQIALTVP 271


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +1

Query: 394 RGPESLPRSTPVPPSQFQPQL--DGEYRT-YLLSPSSTRTDET 513
           +GP  L +S P   ++ QP L     Y T Y   PSS R+  T
Sbjct: 169 KGPVDLSKSEPEKKTESQPMLWPAWVYCTRYSDRPSSGRSPRT 211


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 654 VVRRCPHCWV 625
           VV   PHCWV
Sbjct: 485 VVEGNPHCWV 494


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,959
Number of Sequences: 336
Number of extensions: 4416
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)