Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30836
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.39 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.91 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.7  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   3.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 13/61 (21%), Positives = 27/61 (44%)
 Frame = +1

Query: 322 APRSPIPNASATPFRTPSPLPPSWRGPESLPRSTPVPPSQFQPQLDGEYRTYLLSPSSTR 501
           +P++P   +   P + P P  P    P   P    + P+    Q+    + ++LSP+  +
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQLLQQHILSPTQLQ 89

Query: 502 T 504
           +
Sbjct: 90  S 90



 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 370 PSPLPPSWRGPESLPRSTPVPPSQFQP 450
           P P P   + P++  R +P  PSQ  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPP 47



 Score = 24.2 bits (50), Expect = 1.2
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 322 APRSPIPNASATPFRTPSPLPPSWRGPESLPRSTPVPPSQFQP 450
           AP  PIPN S       S +PP    P S+P + P  PS   P
Sbjct: 415 APMPPIPNMS-----NMSGMPPLPNMPGSMP-TMPTMPSMAGP 451


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 382  PPSWR-GPESLPRSTPVPPSQFQPQL 456
            PP++  G  S+P+   +PPS  QP+L
Sbjct: 1269 PPAYSCGTVSVPQQQQLPPSSPQPRL 1294


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 25/123 (20%), Positives = 42/123 (34%)
 Frame = +1

Query: 286 EREGLRGSGTPLAPRSPIPNASATPFRTPSPLPPSWRGPESLPRSTPVPPSQFQPQLDGE 465
           +R  +  +   LA +   P++ A+P   P       +     P +T V   + QP  D  
Sbjct: 104 QRYNIAAANPLLAEKLAAPSSQASPTSIPYATRAEIKTESIQPETTKVDTREVQPH-DAS 162

Query: 466 YRTYLLSPSSTRTDETIDESIQSQPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAP 645
            +  L   S      +   +  S   R    +L     +   G    Y RH P  A    
Sbjct: 163 EKEQLGLASVKAEPGSTGTTTTSTGTRLLHGILSQHPQQHGLGVQNGYGRHLPGHAQMGR 222

Query: 646 PNH 654
           P++
Sbjct: 223 PSY 225


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 337 IPNASATPFRTPSPLPPSWRGPES 408
           +P      F T   LPP W G ES
Sbjct: 210 VPTLEELGFDTEGLLPPVWVGGES 233


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 231 LCVLVSKVTCVIIVDLRDDI 172
           +CVL +   C++I DL D++
Sbjct: 36  VCVLQANRACILIKDLFDNV 55


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 231 LCVLVSKVTCVIIVDLRDDI 172
           +CVL +   C++I DL D++
Sbjct: 19  VCVLQANRACILIKDLFDNV 38


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 343 NASATPFRTPSPLPPSWRGPES 408
           ++   P   P P PPS  GP+S
Sbjct: 334 DSDTPPKPAPPPPPPSSSGPDS 355


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 153 AGRSTWRHLSLTKVPGLVFRVHALVWHP 70
           AG S  R   +TK+  L+     L W P
Sbjct: 99  AGASGRREAKITKMVALMITAFLLAWSP 126


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 517 DESIQSQPYRTTPLVLPGAK 576
           +ES+ S   RT P +LP  K
Sbjct: 615 EESVHSMELRTLPCLLPRPK 634


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 517 DESIQSQPYRTTPLVLPGAK 576
           +ES+ S   RT P +LP  K
Sbjct: 583 EESVHSMELRTLPCLLPRPK 602


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 14/62 (22%), Positives = 23/62 (37%)
 Frame = +3

Query: 270 HTKGRGTRRTERFRHATSATFAHTQRKRHTIQDSKPVASVMAWSGISASQHTGATFAIPA 449
           H K R  R+ +      +    HTQ + H    S P  S  + +  S    T +  +   
Sbjct: 644 HKKFRALRQKDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSSQAQASQCPQTASLLSSTH 703

Query: 450 TT 455
           +T
Sbjct: 704 ST 705


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 319 LAPRSPIPNASATPFRTPSPLPP 387
           L+PR+PI N       T + L P
Sbjct: 27  LSPRTPIKNVYKNNIETKNQLSP 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,991
Number of Sequences: 438
Number of extensions: 5768
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)