Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30835
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0583 - 26375850-26375971,26376070-26376139,26376227-263763... 29 1.8
03_03_0094 + 14378953-14380728 29 2.4
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 3.2
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33... 28 4.2
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 28 4.2
02_02_0712 + 13200174-13200761,13201966-13202616 28 5.6
11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568 27 7.4
03_05_0314 - 23035295-23036342,23036552-23036616 27 7.4
01_06_0622 + 30669015-30669279,30669467-30670419 27 7.4
12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686 27 9.8
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 27 9.8
05_04_0289 - 19853556-19853844,19853942-19854093,19854104-198543... 27 9.8
05_03_0416 + 13684604-13688050 27 9.8
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 27 9.8
>04_04_0583 -
26375850-26375971,26376070-26376139,26376227-26376309,
26376452-26376629,26377390-26377851
Length = 304
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 301 TGADRRHDDVHLHLQTSNRTEG-QHKSLRESVARLAPPVLDHCLAISGRHHFA 146
T A ++ D+HLH+ TS T G + + LR R PV D L+ S R + A
Sbjct: 180 TVAVTQYGDLHLHVATSLVTVGSEFRKLRILGVRATAPVGDQNLSASTRTNMA 232
>03_03_0094 + 14378953-14380728
Length = 591
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +2
Query: 110 IPEYLSTRRVMESEMMPSGDGQTMVKDWWCKSRNGFPQRLMLPLGTIGGLEMQMYVIVSP 289
+ L R + ES+++ + + W + + L + LG + G+ M +
Sbjct: 208 VKRQLRVRTIYESKLLEHDADRHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQEL-RR 266
Query: 290 VRTGMLLPTLDMTMMKDRCACRWS 361
VR+G+L T +M M D RW+
Sbjct: 267 VRSGILGETDNMVTMHDVMDARWA 290
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 213 PLRDLHHQSLTIVWPSPEGIISLSITRRVERYSGIN 106
P R LHH L ++ PE +++ ++VE G N
Sbjct: 61 PPRGLHHHCLGVLSQGPEDVVAEYYQQQVEMLEGFN 96
>05_01_0048 +
331155-333077,333208-333354,333540-334087,334481-334616
Length = 917
Score = 28.3 bits (60), Expect = 4.2
Identities = 27/98 (27%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Frame = -1
Query: 358 PATSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDH 179
P S VL HV CG H R+ DV + S G H + +SV L
Sbjct: 70 PLESRLVLDVYHVDCGVRHAALVTRNGDVFTWGEDSGGRLG-HGTREDSVHPRLVESLAA 128
Query: 178 C---LAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDG 74
C G H TT W H G G
Sbjct: 129 CNVDFVACGEFHTCAVTTTGELYTWGDGTHNVGLLGHG 166
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 226 SLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKS 104
S + + + VLD + HH A YT S + LW S
Sbjct: 693 SAGDGASLIIKSVLDRATELLTDHHAAASYTVSNRTLWQAS 733
>02_02_0712 + 13200174-13200761,13201966-13202616
Length = 412
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 469 FSVDHYVSELHVASEEARHVNRSVKWISERHGG 371
++ +HY+ +R NRSV W+ HGG
Sbjct: 317 YADEHYLPTFLGIRHPSRVTNRSVTWVDWSHGG 349
>11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568
Length = 605
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 402 LSNGYPRGMVEIHELQRQAQRSFIMVMSNVG 310
++ G RG ++ LQ A RSF++ + NVG
Sbjct: 266 INGGGKRGTIQAGALQAGAVRSFLVYVDNVG 296
>03_05_0314 - 23035295-23036342,23036552-23036616
Length = 370
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 223 LRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIHGATD 80
+RE + + P+ H +A+SG S KV+WD +++ TD
Sbjct: 6 IRELRSLMTTPLHLHLIALSGSEFNHVDGIESAKVIWDTLRNMYEGTD 53
>01_06_0622 + 30669015-30669279,30669467-30670419
Length = 405
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = -2
Query: 444 NFMLLVKKLAMSIGLSNGYPRGMVEIHELQRQAQ 343
N + LV+++ +++G+ GY +G+V E+Q +A+
Sbjct: 327 NKVFLVEEMRLAVGVE-GYDKGIVTAEEIQEKAR 359
>12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686
Length = 601
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 336 RTVVLVAGAHVSPPCLSDIH 395
R + +A AH++PPCL+ +H
Sbjct: 377 RYLTHIARAHMAPPCLARVH 396
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 5/21 (23%)
Frame = -3
Query: 341 GPSSWSCPM-----WARAYRC 294
GP+ WSCPM WA+ +C
Sbjct: 211 GPNDWSCPMCGNINWAKRMKC 231
>05_04_0289 -
19853556-19853844,19853942-19854093,19854104-19854349,
19854464-19854833,19854941-19855233
Length = 449
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = -1
Query: 208 ARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDGV 71
AR V+ + ++G + + +++W K +H+HG D V
Sbjct: 146 ARCVAKVVGTLVTVAGAMLMTLYKGRAVEMVWTKHMHLHGPHQDAV 191
>05_03_0416 + 13684604-13688050
Length = 1148
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 159 LPEMARQWSRTGGASLATDSLRDLCCPSVRLEVW 260
LP + W+ TGGA + D L+ C +W
Sbjct: 854 LPNLEDMWTTTGGAEIRGDELQAKYCFPALSTLW 887
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 411 SIGLSNGYPRGMVEIHELQRQAQRSFIMVMSNVGKS 304
S+ LSN Y R +V++H ++ +S + +NVG S
Sbjct: 789 SVSLSN-YQRKLVDVHRDAQKLMQSLDGIQANVGSS 823
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,520
Number of Sequences: 37544
Number of extensions: 388630
Number of successful extensions: 1229
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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