Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30835
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   29   2.5  
SB_20346| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)                29   2.5  
SB_45773| Best HMM Match : TFIIB (HMM E-Value=0.0018)                  29   3.3  
SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)            29   3.3  
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)           28   5.7  
SB_50226| Best HMM Match : LEA_4 (HMM E-Value=0.18)                    27   7.6  
SB_42225| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   7.6  

>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -1

Query: 235  QHKSLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIH 92
            ++  LR++  ++   + +H L     HH   +Y  S K+L  ++ H+H
Sbjct: 1563 RYAELRKTAEKVYQSIAEHRLTQKYIHHSKEYYRHSSKILKSRTRHLH 1610


>SB_20346| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)
          Length = 461

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 544 VGEIVLHHDHLRGVHGLAGVRHAEVFSVDHYVSELHVASEEARHVNRSV 398
           +G ++   DH+ G+H +       +  VDH +  +H   +E  HV R V
Sbjct: 144 MGHVIREVDHVIGIHKIEKEVDHVIREVDHVIG-IHKIEKEVDHVIREV 191



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 544 VGEIVLHHDHLRGVHGLAGVRHAEVFSVDHYVSELHVASEEARHV-NRSVKWISERHGGD 368
           +G ++   DH+ G+H +       +  VDH +  +H   +E  HV  + V  + E H  +
Sbjct: 83  MGHVIREVDHVIGIHKIEKEVDHVIREVDHVIG-IHKIEKEVDHVIKQKVGHVIEVHKIE 141

Query: 367 T 365
           T
Sbjct: 142 T 142


>SB_45773| Best HMM Match : TFIIB (HMM E-Value=0.0018)
          Length = 242

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 352 TSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVA 206
           TS TV+HH H   G+      ++ +   L+ +T NR+   +++  +S A
Sbjct: 179 TSLTVVHHIHDVMGKFSASPTQKGEVAQLYYRTKNRSSKLNRARPQSFA 227


>SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 235 APRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLH 375
           A R+D   GD DV+ +VA  H        HDHD   + L+L   YL+
Sbjct: 21  ASRHD--HGDGDVKIKVASRHD---PDKRHDHDNDTITLALRSRYLY 62


>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
          Length = 796

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -3

Query: 227 VSEGIRCETCTTSP*PLSGHLRKASFRFPLHDESKG 120
           VSE   C +      PLSGH R  S   PL D S G
Sbjct: 501 VSETTSCPSIDDPDGPLSGHTRPFSSMEPLSDPSAG 536


>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 22/58 (37%), Positives = 26/58 (44%)
 Frame = -1

Query: 229 KSLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDGVLSVDQ 56
           KSL+ES A       DHCLA  G +H A   T  R       LH    T +G L  D+
Sbjct: 51  KSLQESNAEYC----DHCLACGGDNHKARFCTLRRSF---TKLHTQNITRNGKLRWDK 101


>SB_24110| Best HMM Match : Metallothionein (HMM E-Value=1.9)
          Length = 237

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 18  ASTCSSWTALCTNWST 65
           ++ C+ W+ +CT WST
Sbjct: 190 STVCTKWSTVCTKWST 205



 Score = 27.9 bits (59), Expect = 5.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 18  ASTCSSWTALCTNWST 65
           ++ C+ W+ +CT WST
Sbjct: 197 STVCTKWSTVCTKWST 212


>SB_50226| Best HMM Match : LEA_4 (HMM E-Value=0.18)
          Length = 760

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 6   STTNASTCSSWTALCTNWSTERTPSSVAPWIC-KDLSQ 116
           S+ N +TC   T  C +W ++RT  S  P++  K LS+
Sbjct: 240 SSVNHATCPLPTVQCRSWISQRTFHSPPPFLALKVLSE 277


>SB_42225| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 300

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 207 RDLHHQSLTIVWPSPEGIISLSITRRVERYS 115
           R LH + L + W +PE I+S   T   + +S
Sbjct: 193 RQLHRRPLPVRWMAPEAILSYRFTPETDIWS 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,373,397
Number of Sequences: 59808
Number of extensions: 427406
Number of successful extensions: 1283
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)