Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30835
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78690.1 68414.m09172 phospholipid/glycerol acyltransferase f...    29   2.7  
At5g52330.1 68418.m06494 meprin and TRAF homology domain-contain...    28   3.5  
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    28   3.5  
At5g55200.1 68418.m06881 co-chaperone grpE protein, putative sim...    27   6.2  
At5g37040.1 68418.m04442 F-box family protein contains Pfam prof...    27   6.2  
At1g50650.1 68414.m05694 stigma-specific Stig1 family protein lo...    27   6.2  
At5g53550.1 68418.m06654 transporter, putative similar to iron-p...    27   8.2  
At5g13110.1 68418.m01502 glucose-6-phosphate 1-dehydrogenase, pu...    27   8.2  
At3g15160.1 68416.m01917 expressed protein                             27   8.2  
At3g15090.1 68416.m01908 oxidoreductase, zinc-binding dehydrogen...    27   8.2  
At2g46180.1 68415.m05742 intracellular protein transport protein...    27   8.2  
At1g57570.1 68414.m06533 jacalin lectin family protein similar t...    27   8.2  
At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit...    27   8.2  

>At1g78690.1 68414.m09172 phospholipid/glycerol acyltransferase
           family protein similar to SP|Q16635 Tafazzin from Homo
           sapiens; contains Pfam profile: PF01553 Acyltransferase
          Length = 284

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
 Frame = -2

Query: 348 AQRSFIMVMSNVGKSIPVRTGDTMTYICISKPPIVPRGSISL*GNPLRDLHHQSLTIVWP 169
           A  +F   ++N+     V   DT+  +  S+PP VP  ++S   + L D       ++W 
Sbjct: 25  AVSAFAKAVANLCNKSSVHNADTLMNLVQSRPPGVPLITVSNHMSTLDD------PVMWG 78

Query: 168 SPEGIISL--SITRRVERYSGI---NPCISMELRTMVFFPLT 58
           + +G++SL   + R V     I   NP  S   RT    P+T
Sbjct: 79  AFKGLLSLDPELARWVLAAEDICFRNPIFSYIFRTGKCIPIT 120


>At5g52330.1 68418.m06494 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 397

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 490 GVRHAEVFSVDHYVSELHVASEEARHVNRSVKWISE 383
           G R  E+F +DH  S++ VA +EA  + R  + I E
Sbjct: 341 GRRTVEIFVLDHIFSKIEVAYKEAIALKRQEELIRE 376


>At4g36080.1 68417.m05136 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF00454: Phosphatidylinositol 3-
            and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 421  ARHVNRSVKWISERHGGDT*APATSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNR 245
            A+ + ++V  +S  HGG       S T +H G      + +GA   HD  +LH+Q S R
Sbjct: 3209 AQRMQQNVPGVSAGHGGGN---LPSETQIHQG-----SQTSGAVGTHDGGNLHVQESER 3259


>At5g55200.1 68418.m06881 co-chaperone grpE protein, putative
           similar to chaperone GrpE type 2 [Nicotiana tabacum]
           GI:3851640; contains Pfam profile PF01025: co-chaperone
           GrpE
          Length = 302

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 223 LRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDGVL 68
           LR S + +  P  +    ++ R H   H T ++ V    SL  HG  D  VL
Sbjct: 16  LRSSFSSVVTPKRNQIPIVASRFHSLVHGTPNKLVAVPVSLRNHGTLDLNVL 67


>At5g37040.1 68418.m04442 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 242

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 520 DHLRGVHGLAGVRHAEVFSVDHY 452
           DHLRG H L G      F  DH+
Sbjct: 85  DHLRGQHSLYGTCDGNFFLYDHF 107


>At1g50650.1 68414.m05694 stigma-specific Stig1 family protein low
           similarity to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 174

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
 Frame = +3

Query: 21  STCSSW------TALCTNWSTERTPSSVAPWICKDLSQSTFRL 131
           +T SSW       A  TNW   + P    PWICK    S  R+
Sbjct: 31  NTTSSWLKSHIKAATTTNWGRPKPPMC-KPWICKRSGPSEARM 72


>At5g53550.1 68418.m06654 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 669

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -2

Query: 441 FMLLVKKLAMSIGLSNGYPRGMVEIHELQRQAQRSFIMVMSNVGKSIPVRTG 286
           F+++   LA S+G SN Y  G+ +++      + +  ++ +  GK   V  G
Sbjct: 411 FIVVAYMLAPSLGFSNAYGAGLTDMNMAYNYGKVALFILAAMAGKQNGVVAG 462


>At5g13110.1 68418.m01502 glucose-6-phosphate 1-dehydrogenase,
           putative / G6PD, putative similar to SP|Q43839
           Glucose-6-phosphate 1-dehydrogenase, chloroplast
           precursor (EC 1.1.1.49) (G6PD) {Solanum tuberosum};
           contains Pfam profiles PF02781: Glucose-6-phosphate
           dehydrogenase C-terminal, PF00479: Glucose-6-phosphate
           dehydrogenase NAD binding domain
          Length = 596

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 216 NPLRDLHHQSLTIVWPSPEGIISLSITRRVERYSG 112
           +P+    H+SL+ +  SP+G+  L +  R +R SG
Sbjct: 22  SPVNGDRHRSLSFLSASPQGLNPLDLCVRFQRKSG 56


>At3g15160.1 68416.m01917 expressed protein
          Length = 562

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 130 SSCNGKRNDAFRRWPDNGQGLVVQVSQRIPSETYAAPRYDWRFGD 264
           S  + KR      W + GQ +V  +   I SE    P +D+ F D
Sbjct: 513 SRVSEKRFPGTVNWSEGGQKMVAHIPFHILSEQGGPPFHDFAFSD 557


>At3g15090.1 68416.m01908 oxidoreductase, zinc-binding dehydrogenase
           family protein low similarity to NOGO-interacting
           mitochondrial protein from Mus musculus [gi:14522884];
           contains Pfam profile: PF00107 zinc-binding
           dehydrogenases
          Length = 366

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 85  TDDGVLSVDQFVHKAVQLEHVEAFVV 8
           TD G+LS D+   K   + HVEA  +
Sbjct: 133 TDYGILSEDELTEKPSSISHVEASAI 158


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 490 GVRHAEVFSVDHYVSELHVASEEARHVNRSVKWISER 380
           G  +AE+ + +H+  EL VA E+A  ++  +K + E+
Sbjct: 474 GQYYAEIEAKEHFERELAVAKEDAMKLSARLKDVDEQ 510


>At1g57570.1 68414.m06533 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 614

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 517 HLRG-VHGLAGVRHAEVFSVDHYVSELHVASEEARHVNRS 401
           H+ G +HGL+G    + F +DH  +E H+   E  + + S
Sbjct: 221 HINGSIHGLSGSGFTQTFEIDHLNNE-HLVCVEGYYDDES 259


>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 311

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = +2

Query: 353 RWSSCISTMPLGYPFDRPIDMASFFTSNMKFADVMIYRKDLGMSNTSKTVDTSEMVMMKD 532
           +W+    T P+G  FD  I    +F  N  + D   Y    G+      +D   M    D
Sbjct: 163 QWAVVGDTFPVGCAFDESIVHHKYFKENPDY-DNPSYNSKYGIYTEGCGLDNVLMSWGHD 221

Query: 533 DLTYL 547
           D  YL
Sbjct: 222 DYMYL 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,643,091
Number of Sequences: 28952
Number of extensions: 285957
Number of successful extensions: 976
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)