Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30831
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    31   0.22 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   3.6  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   6.3  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   6.3  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   8.3  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.3  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    25   8.3  

>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 16/36 (44%), Positives = 25/36 (69%)
 Frame = +2

Query: 296 FLLINIKYFVHVPLD*MNCLYFILVVYLSISLYVFH 403
           FLL+N+K  +HV  +    LYFI+ +Y+ I+L VF+
Sbjct: 428 FLLLNLKESIHVWKE----LYFIVHIYILIALAVFN 459


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 632 SCFYRIYFQINALVKNIHRFLSMW 703
           SCFY+ Y++  +   N+  F  +W
Sbjct: 318 SCFYKSYYEYRSWFHNVTNFSRIW 341


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = -3

Query: 632 KSTITYEILGK*NLVNQQQHNXXXXXXXXXXXFVNNIFHHNKMKQNEKNRYKDELVTSQK 453
           K T+ Y+I    N V +   N            +N+    N+   NE+N  K+ L TS+ 
Sbjct: 567 KQTVQYQIS---NAVKENS-NTLSEQIKNLESELNSSKIKNESLLNERNLLKEMLATSRS 622

Query: 452 GVLTH 438
            +L+H
Sbjct: 623 SILSH 627


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 38  VYKSLVKRSLIAGESYIYYVQSTSAPTS 121
           VYK +V+R+L  G ++  Y  +   PTS
Sbjct: 120 VYKRVVERTLSNGTTFASYFSTLHTPTS 147


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 233 IISRRAETRFDKMFSLNKTDYFLLINIKYFV 325
           +++R A+T F   + LNK +  LLI I +F+
Sbjct: 3   LLNRLAKT-FSPYYGLNKVEQKLLIKIDWFI 32


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 23/60 (38%), Positives = 28/60 (46%)
 Frame = +2

Query: 296 FLLINIKYFVHVPLD*MNCLYFILVVYLSISLYVFHKKNTFCIHYVRYVSKHLSVRSPTH 475
           FL+I I Y     L   N    I+   L   L +F+    F  H VR+  K LSVRSP H
Sbjct: 210 FLVIFICYIFFTVLSFFNVPDAIVYSKLCRGL-MFYLLYPFGQH-VRHKVKRLSVRSPAH 267


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 369 TNIKYRQFIQSSGTCTKYFIFINKK*SVLFRENILSKRVSARLDIMY 229
           ++ K+ +F+ + G C KY  + NK  S L ++    K V      +Y
Sbjct: 164 SDTKWLEFVSAKGQCPKYLYWNNK--SYLLKKKRFLKEVGNSPSAVY 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,262
Number of Sequences: 5004
Number of extensions: 55114
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)