Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30831
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)               29   2.9  
SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)             29   3.8  
SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4)              29   3.8  
SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)          29   5.0  
SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)
          Length = 272

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/103 (21%), Positives = 43/103 (41%)
 Frame = +2

Query: 218 CIVIYIISRRAETRFDKMFSLNKTDYFLLINIKYFVHVPLD*MNCLYFILVVYLSISLYV 397
           CI   +I   +      + S +   + +++++ Y   V +  ++C+  I++VYLS   Y 
Sbjct: 126 CICHIVIVHLSYRHRASVISSSCICHIVIVHLSYRYRVSVISLSCICHIVIVYLSYR-YR 184

Query: 398 FHKKNTFCIHYVRYVSKHLSVRSPTHLYIYFFHFVSFYCDEKC 526
               +  CI ++  V      R+   L     H V  Y   +C
Sbjct: 185 VSVISLSCICHIVIVHPSYRYRASVILSSCICHIVIVYLSYRC 227


>SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)
          Length = 319

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 230 YIISRRAETRFDKMFSLNKTDYFLLINI 313
           +I  RR E  F+ +F++N   +FLLIN+
Sbjct: 128 FIPFRRTEDGFEMIFAVNHLSHFLLINL 155


>SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4)
          Length = 167

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 413 TFCIHYVRYVSKHLSVRSPTHLYIYFFHFVSFYCDEK 523
           T C+ Y+ +V   +  R   HL  YF+ F   YC+E+
Sbjct: 5   TQCVRYILFVLFLIGKRP--HLQGYFYDFTESYCNER 39


>SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)
          Length = 428

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 413 TFCIHYVRYVSKHLSVRSPTHLYIYFFHFVSFYCDEK 523
           T C+ Y+ +V   +  R   HL  YF+ F   YC+E+
Sbjct: 367 TQCVRYILFVLFLIGNRP--HLQGYFYDFTESYCNER 401


>SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 413 TFCIHYVRYVSKHLSVRSPTHLYIYFFHFVSFYCDEK 523
           T C+ Y+ +V   +  R   HL  YF+ F   YC+E+
Sbjct: 48  TQCVRYILFVLFLIGNRP--HLQGYFYDFTESYCNER 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,392,975
Number of Sequences: 59808
Number of extensions: 361352
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)