Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30831
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon ge...    28   5.9  
AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.      28   5.9  
U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine rece...    28   7.8  
U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine rece...    28   7.8  

>U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon gene
           protein 1 protein.
          Length = 892

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +2

Query: 371 VYLSISLYVFHKKNTFCIHYVRYVSKH----LSVRSPTHLYI 484
           +Y  +S ++F  +NT   H++R+  K+    +++ SPT  Y+
Sbjct: 321 IYTFLSSFLFDTQNTLTTHWIRHNEKYCLEPITLSSPTGEYV 362


>AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.
          Length = 885

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = +2

Query: 371 VYLSISLYVFHKKNTFCIHYVRYVSKH----LSVRSPTHLYI 484
           +Y  +S ++F  +NT   H++R+  K+    +++ SPT  Y+
Sbjct: 314 IYTFLSSFLFDTQNTLTTHWIRHNEKYCLEPITLSSPTGEYV 355


>U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine
           receptor, class h protein187 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 713 ICIATYLKIYVYFSLTHLFENKFY 642
           + + T+L  YV+ S+T LFEN+FY
Sbjct: 102 VWVFTFLA-YVHVSITALFENRFY 124


>U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 5 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 326 VQNILYLLIRNNQSCLEKTFCQNVFPHALILC 231
           ++ +L L    N  CL  T+  ++F +AL+LC
Sbjct: 44  LKRVLLLPFHGNLKCLLITYFSSIFLYALVLC 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,000,804
Number of Sequences: 27780
Number of extensions: 301937
Number of successful extensions: 729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)