Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30831
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 209 LTYCIVIYIISRRAETRFDKMFSLNKTDYFLLINIKYFVHVPLD*MNCLYFILV 370
           +T  + +  IS  + T   K+      D+FLL++  Y +   L+     YF  V
Sbjct: 281 ITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFGYCIATLLEFAGVHYFTKV 334


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 370 SISLYLAICFP*KKYVLYSL 429
           S+  YLAIC P + Y +  L
Sbjct: 136 SMERYLAICHPLRVYTISGL 155


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 355 VFYIGSISLYLAICF 399
           + Y+ +I +YL +CF
Sbjct: 298 ISYVKAIDIYLVMCF 312


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 355 VFYIGSISLYLAICF 399
           + Y+ SI +YL  CF
Sbjct: 277 ISYVKSIDVYLGTCF 291


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 355 VFYIGSISLYLAICF 399
           + Y+ SI +YL  CF
Sbjct: 277 ISYVKSIDVYLGTCF 291


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 355 VFYIGSISLYLAICF 399
           + Y+ SI +YL  CF
Sbjct: 216 ISYVKSIDVYLGTCF 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,964
Number of Sequences: 438
Number of extensions: 3734
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)