Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30830
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   303   6e-83
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   301   3e-82
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   301   3e-82
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR...    29   3.4  
At4g39450.1 68417.m05582 expressed protein                             29   4.4  
At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase...    28   5.9  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  303 bits (745), Expect = 6e-83
 Identities = 146/182 (80%), Positives = 165/182 (90%), Gaps = 1/182 (0%)
 Frame = +1

Query: 130 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 306
           E+KLF RWS  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77

Query: 307 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 486
           SLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRIG AG V
Sbjct: 78  SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137

Query: 487 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKKD 666
           RRQAVD+SPLRRVNQAI+LL TGAREAAFRNIKTIAEC+ADELINAAKGSSNSYAIKKKD
Sbjct: 138 RRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197

Query: 667 EL 672
           E+
Sbjct: 198 EI 199


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  301 bits (739), Expect = 3e-82
 Identities = 146/188 (77%), Positives = 167/188 (88%), Gaps = 1/188 (0%)
 Frame = +1

Query: 112 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 288
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 289 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 468
           VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRI
Sbjct: 72  VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131

Query: 469 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSY 648
           G AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSY
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSY 191

Query: 649 AIKKKDEL 672
           AIKKKDE+
Sbjct: 192 AIKKKDEI 199


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  301 bits (739), Expect = 3e-82
 Identities = 146/188 (77%), Positives = 167/188 (88%), Gaps = 1/188 (0%)
 Frame = +1

Query: 112 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 288
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71

Query: 289 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 468
           VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRI
Sbjct: 72  VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131

Query: 469 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSY 648
           G AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFRNIKTIAEC+ADELINAAKGSSNSY
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSY 191

Query: 649 AIKKKDEL 672
           AIKKKDE+
Sbjct: 192 AIKKKDEI 199


>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1556

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +2

Query: 71   PRQAAWL-WKPC-LYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQL 244
            P +  W+ WK   L + PP  L       GV  + +S +   +T  P KR  +N+ ++ L
Sbjct: 795  PSELKWIQWKGFPLENLPPDILSRQL---GVLDLSESGVRRVKT-LPRKRGDENLKVVNL 850

Query: 245  AGMHTSVSVKPSAQSWSALQTL 310
             G H  +   P   + +AL+ L
Sbjct: 851  RGCH-GLEAIPDLSNHNALEKL 871


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +1

Query: 502 DVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 645
           DVSPL  +   IWL  T ARE +   +  I   +A E I AA  S+NS
Sbjct: 411 DVSPLSCLT--IWLEITAARETSSIKVNDITTKIA-ENIGAAVVSTNS 455


>At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase C
           nearly identical to phosphoinositide-specific
           phospholipase C GI:557880 from [Arabidopsis thaliana];
           contains Pfam profile: PF00388
           phosphatidylinositol-specific phospholipase C
          Length = 526

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 632 VHLTPTPSKRRTSWERVA 685
           VH T TP+ + TSW RVA
Sbjct: 223 VHTTRTPTVKETSWNRVA 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,955,680
Number of Sequences: 28952
Number of extensions: 333225
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)