Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30829
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 233 1e-62
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 30 0.29
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 28 1.6
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 6.3
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 6.3
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 26 6.3
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 26 6.3
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 8.3
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 8.3
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 233 bits (571), Expect = 1e-62
Identities = 117/176 (66%), Positives = 137/176 (77%)
Frame = -1
Query: 714 KKGSITSVQAIYVXXXXXXXXXXXXXXAHLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
KKGSITSVQA+YV AHLDAT VL R+I+ELGIYPAVDPLDS SR+MD
Sbjct: 346 KKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMMD 405
Query: 534 PNIIGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEEDKLTVARARKIQRFLSQPFQ 355
P I+G EHYN+A VQ++ Q+YKSLQDIIAILGMDEL E DKLTV RARK+QRFLSQPF
Sbjct: 406 PRILGEEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLTVERARKVQRFLSQPFA 465
Query: 354 VAEVFTGHAGKLVPLEETIKGFSKILAGDYDPLPEVAFYMVGPIEEVVAKAETLAK 187
VAEVFTG G+LV L++TI+ F +IL G +D LPE AFYMVG I++ V KAE +A+
Sbjct: 466 VAEVFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 30.3 bits (65), Expect = 0.29
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = -1
Query: 603 RAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKIFQDYKSLQDIIAILG 436
R + IYP ++ L S SR+M I +H +V+ + ++ + + +++G
Sbjct: 359 RQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSVVG 418
Query: 435 MDELFEEDKLTVARARKIQR-FLSQ 364
+ L +ED+L + K ++ F+SQ
Sbjct: 419 EEALSQEDRLALEFLGKFEKTFISQ 443
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = -1
Query: 555 STSRIMDPNIIGAEHYNVARGVQKIFQDYKSLQDIIAILG 436
++ RI+ P+II E + + + +F+D K++ +++ LG
Sbjct: 312 ASKRILYPSIIPEEIFFMRKFDSSLFKDIKNIHELLGFLG 351
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 269 SPAKILENPLMVSSRGTSLPACPVNTSA 352
SP ENPL +SSR + P CP S+
Sbjct: 294 SPQSHYENPLSISSRPS--PCCPSTPSS 319
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -1
Query: 258 LPEVAFYMVGPIEEVVAKAETLAKNA*TGQYCVIILKSCRVIY*K 124
LP + +Y+ GP + V AK+ + N +C+ +++S R ++ K
Sbjct: 373 LPPIDYYLNGPYDNVEAKSALM--NI-YSSHCITLIESVRYMHLK 414
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 561 LDSTSRIMDPNIIGAEHYNVARGVQKIFQ 475
+ S S +DP IIG ++ + +Q+IFQ
Sbjct: 11 ISSLSLSLDPEIIGGQNNFLENNLQQIFQ 39
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 667 ISWYINSLHRCDGTFLGG 720
++WY++SLHR G + G
Sbjct: 71 LTWYLSSLHRITGCVVAG 88
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 8.3
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +1
Query: 661 QVISWYINSLHRCDG 705
+ +SW++N+LH C G
Sbjct: 265 EFLSWFLNTLHNCLG 279
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -1
Query: 621 ATPVL--FRAIAELGIYPAVDPLDSTSRIMDPNII 523
A P++ + + E GIY ++D S + DPN+I
Sbjct: 149 AIPIVTAYETLGEDGIYTSLDECKSRAIFTDPNLI 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,793
Number of Sequences: 5004
Number of extensions: 62579
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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