Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30829
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1003 - 21631188-21631274,21631939-21632043,21632171-216322...    32   0.40 
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315...    32   0.40 
07_03_1201 + 24791588-24792619                                         31   1.2  
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162...    30   1.6  
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340...    28   6.5  
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367...    28   8.6  
12_01_0142 - 1093127-1093336,1093519-1093731,1093819-1093962,109...    28   8.6  
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242...    28   8.6  

>04_03_1003 -
           21631188-21631274,21631939-21632043,21632171-21632248,
           21632337-21632411,21632908-21632994,21633091-21633158,
           21633478-21633565,21633684-21633784,21633831-21633990,
           21635088-21635246,21635351-21635527
          Length = 394

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +1

Query: 529 IGVHDTGC*VKRIHSWVDTQFSNGSKKYRGSIQVSKSGG---WSRISQVISWYINSL 690
           +G HD+G   K I  W     +NGS ++   ++   + G   +SR   +++W +N+L
Sbjct: 115 LGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGNITFSRFRFLVAWLVNAL 171


>01_06_0458 +
           29531069-29531126,29531247-29531302,29531407-29531505,
           29531989-29532048,29532285-29532396,29532459-29532694,
           29533092-29533220,29533325-29533462,29534043-29534193,
           29534394-29534476,29534658-29534705,29534828-29534881,
           29534971-29535054,29535152-29535337
          Length = 497

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
 Frame = -1

Query: 714 KKGSITSVQAIYVXXXXXXXXXXXXXXAHLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
           +KGSIT +  + +                 +    + R +    IYP ++ L S SR+M 
Sbjct: 331 RKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMK 390

Query: 534 PNI----IGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEEDKLTVARARKIQR-FL 370
             I       +H +V+  +   +   K +Q + A++G + L  ED L +    K +R F+
Sbjct: 391 SAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFV 450

Query: 369 SQ 364
           +Q
Sbjct: 451 TQ 452


>07_03_1201 + 24791588-24792619
          Length = 343

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
 Frame = -1

Query: 465 SLQDIIAILGMDELFEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPL--EETIKG 292
           S  D + +L  ++L   D       R + RF+ +PF  AE   G    +V L   E +K 
Sbjct: 227 SRPDRVLLLRYEDLLR-DGAAGEHVRAMARFMGRPFSAAEEAAGAVASVVELCSFERMKA 285

Query: 291 FS---KILAGDYDPLPEVAFYMVG 229
                +  AG Y  +P  AF+  G
Sbjct: 286 LEVNRRGTAGSYKSMPRDAFFRKG 309


>06_03_0510 -
           21615724-21615909,21615992-21616075,21616164-21616217,
           21616324-21616371,21616529-21616611,21616963-21617113,
           21617648-21617785,21617966-21618094,21618391-21618596,
           21618734-21618845,21619145-21619204,21619331-21619429,
           21619520-21619575,21620230-21620313,21621407-21621500
          Length = 527

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = -1

Query: 582 IYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEE 415
           IYP ++ L S SR+M   I       +H +V+  +   +   K +Q + A++G + L  E
Sbjct: 405 IYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSE 464

Query: 414 DKLTVARARKIQR-FLSQ 364
           D L +    K +R F++Q
Sbjct: 465 DLLYLEFLDKFERKFVTQ 482


>02_01_0473 -
           3403547-3404241,3404455-3404983,3405299-3405477,
           3405868-3405952,3406136-3406482,3407061-3407159,
           3408135-3408636
          Length = 811

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 329 ACPVNTSATWKGCERNL*ILR 391
           A P NTS TWKG E  L +L+
Sbjct: 440 AFPSNTSPTWKGIEHGLELLK 460


>12_01_0471 -
           3672309-3672740,3673159-3673251,3673271-3673399,
           3673400-3673448,3674291-3674378,3674477-3674573,
           3675195-3675278,3675377-3675464,3676589-3676715,
           3676774-3676848,3676934-3677042,3677125-3677448,
           3677863-3678039
          Length = 623

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 586 GYLPSCGSS*LNIPYHGPQYYWS*ALQCCTWSSE 485
           GYL     S   + + G  YY   AL CCTWSS+
Sbjct: 361 GYLRVFDFSKEQLIFGGKSYYG--ALLCCTWSSD 392


>12_01_0142 -
           1093127-1093336,1093519-1093731,1093819-1093962,
           1094202-1094312,1094935-1094956,1095457-1095701
          Length = 314

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = +1

Query: 433 HTQNSNNVLQGFVVLKNFLNSTCNIVVLSSNNIGVHDTGC*V-KRIHSWV--DTQFSNGS 603
           H QNS   L+   V KN L+S      L +  + + D+   V   + +WV  + +F   S
Sbjct: 97  HIQNSTKELKQGPVGKN-LSSAEKRKFLVNTLLDLEDSKEGVYSTLDAWVAFEQEFPVAS 155

Query: 604 KKYRGSIQVSKSGGWSRISQVISWYIN 684
            K +  + + K   W RI QVI W ++
Sbjct: 156 LK-QALVALEKEEQWHRIVQVIKWMLS 181


>01_03_0260 - 14323503-14323603,14323751-14323990,14324212-14324275,
            14324349-14324654,14324841-14325055,14325551-14325845,
            14325965-14326129,14326324-14327352,14333553-14333814,
            14334135-14334631,14338714-14340123
          Length = 1527

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = -2

Query: 605  LEPLLNWVSTQLWI-----LLTQHPVSWTPILLELSTTMLHVEFRKFFRTTN 465
            L P   W+S  ++I     ++    V+W  ++L +   ML++ FRK++ +T+
Sbjct: 1077 LLPFFVWMSVSMYITVIGVVIMTCQVAWPSVVLVVPLLMLNLWFRKYYISTS 1128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,702,600
Number of Sequences: 37544
Number of extensions: 397596
Number of successful extensions: 857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)