Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30829
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 271 3e-73
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 44 2e-04
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_13011| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_26065| Best HMM Match : Peptidase_A17 (HMM E-Value=6.5e-19) 29 2.9
SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_23904| Best HMM Match : RdRP (HMM E-Value=0) 28 6.7
SB_57162| Best HMM Match : DUF1086 (HMM E-Value=3.4) 28 8.8
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 28 8.8
SB_39426| Best HMM Match : C4 (HMM E-Value=0) 28 8.8
SB_34962| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_22733| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.8) 28 8.8
SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_57197| Best HMM Match : Transposase_21 (HMM E-Value=0.27) 28 8.8
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08) 28 8.8
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 271 bits (665), Expect = 3e-73
Identities = 136/176 (77%), Positives = 146/176 (82%)
Frame = -1
Query: 714 KKGSITSVQAIYVXXXXXXXXXXXXXXAHLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
KKGSITSVQAIYV AHLDAT VL R IAELGIYPAVDPLDSTSRIMD
Sbjct: 270 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMD 329
Query: 534 PNIIGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEEDKLTVARARKIQRFLSQPFQ 355
PNI+G EHY +ARGVQKI QDYKSLQDIIAILGMDEL E+DKLTVARARKIQ+FLSQPF
Sbjct: 330 PNIVGTEHYEIARGVQKILQDYKSLQDIIAILGMDELSEDDKLTVARARKIQKFLSQPFV 389
Query: 354 VAEVFTGHAGKLVPLEETIKGFSKILAGDYDPLPEVAFYMVGPIEEVVAKAETLAK 187
AEVFTGH GKLVPL+ETI GF+KIL G+ D LPEVAFYM+GPIEE VAKA+ LA+
Sbjct: 390 TAEVFTGHDGKLVPLKETIVGFNKILKGELDHLPEVAFYMIGPIEEAVAKADRLAE 445
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/43 (58%), Positives = 26/43 (60%)
Frame = -1
Query: 714 KKGSITSVQAIYVXXXXXXXXXXXXXXAHLDATPVLFRAIAEL 586
KKGSITSVQA+YV AHLDAT VL R IAEL
Sbjct: 195 KKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAEL 237
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/69 (28%), Positives = 25/69 (36%)
Frame = -3
Query: 652 CSSPHFCSLGCYPCTF*SHC*IGYLPSCGSS*LNIPYHGPQYYWS*ALQCCTWSSENFSG 473
C H+C L YP H Y G L+ + P YW C N++
Sbjct: 2894 CPPGHYCKLRSYPTPCPIH---RYRDIPGGEDLDDCFKCPAGYW-----CNVTGMNNYNN 2945
Query: 472 LQIPAGHYC 446
P GHYC
Sbjct: 2946 SACPLGHYC 2954
>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 302 VSSRGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSNNSSIPKIAI 451
+S +L AC +N S T C N+ + +A N+S + + + I++
Sbjct: 585 MSENSLNLTACVINISMTQAACMTNISVTQAACVTNISMTQAACVTNISM 634
>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1683
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -1
Query: 315 PLEETIKGFSKILAGDYDPLPEVAFYMV 232
P EET +G K LAG YDPL + Y+V
Sbjct: 1048 PAEETKRGVLKKLAGLYDPLGWASPYVV 1075
>SB_13011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -1
Query: 315 PLEETIKGFSKILAGDYDPLPEVAFYMV 232
P EET +G K LAG YDPL + Y+V
Sbjct: 217 PAEETKRGVLKKLAGLYDPLGWASPYVV 244
>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1497
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -1
Query: 315 PLEETIKGFSKILAGDYDPLPEVAFYMV 232
P EET +G K LAG YDPL + Y+V
Sbjct: 842 PAEETKRGVLKKLAGLYDPLGWASPYVV 869
>SB_26065| Best HMM Match : Peptidase_A17 (HMM E-Value=6.5e-19)
Length = 317
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -1
Query: 315 PLEETIKGFSKILAGDYDPLPEVAFYMV 232
P EET +G K LAG YDPL + Y+V
Sbjct: 67 PAEETKRGVLKKLAGLYDPLGWASPYVV 94
>SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -1
Query: 315 PLEETIKGFSKILAGDYDPLPEVAFYMV 232
P EET +G K LAG YDPL + Y+V
Sbjct: 597 PAEETKRGVLKKLAGLYDPLGWASPYVV 624
>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = -1
Query: 582 IYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEE 415
IYP ++ L S SR+M I +H +V+ + + K +Q + A++G + L E
Sbjct: 306 IYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALTSE 365
Query: 414 DKLTVARARKIQRFL 370
D L + K ++ L
Sbjct: 366 DLLYLEFLTKFEKNL 380
>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
Length = 1511
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -1
Query: 564 PLDSTSRIMDPNIIGAEHYNVARGVQKIFQDY-KSLQDIIAILGMDELFEEDKLTVARAR 388
P + T +DPN++ A + + ++Q+Y L I+ I G++ E + +
Sbjct: 457 PKEITKPCLDPNLLVAGYRRFLDEAKNVYQEYCLRLDHIMGIYGINT--EAELFSGCFRL 514
Query: 387 KIQRFLSQPFQVAEVFTG 334
QR + +VAEV +G
Sbjct: 515 LYQRLSRERTEVAEVVSG 532
>SB_57162| Best HMM Match : DUF1086 (HMM E-Value=3.4)
Length = 512
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 503 LHVEFRKFFRTTNPCRTLLLFWVWTSYLKKTS*QW 399
LH + + +FR N CR +L W + K + W
Sbjct: 242 LHEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSW 276
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 491 FRKF-FRTTNPCRTLLLFWVWTSYLKKTS*QWHVHVKF 381
FRK+ F+ NPCR L +F S + W VH K+
Sbjct: 198 FRKYGFKVKNPCRILRIFHNHCSQYR----DWEVHKKY 231
>SB_39426| Best HMM Match : C4 (HMM E-Value=0)
Length = 188
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 293 PLM-VSSRGTSLPACPVNTSATWKG 364
P+M V S+ T+LP CP S+ W G
Sbjct: 35 PVMAVHSQSTTLPTCPGGWSSLWSG 59
>SB_34962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 503 LHVEFRKFFRTTNPCRTLLLFWVWTSYLKKTS*QW 399
LH + + +FR N CR +L W + K + W
Sbjct: 139 LHEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSW 173
>SB_22733| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.8)
Length = 203
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 503 LHVEFRKFFRTTNPCRTLLLFWVWTSYLKKTS*QW 399
LH + + +FR N CR +L W + K + W
Sbjct: 139 LHEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSW 173
>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -1
Query: 609 LFRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHY 508
L R G YPA DP R PNI A HY
Sbjct: 204 LLRYNITTGDYPAWDPTTDYQRNSRPNIANAFHY 237
>SB_57197| Best HMM Match : Transposase_21 (HMM E-Value=0.27)
Length = 314
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 503 LHVEFRKFFRTTNPCRTLLLFWVWTSYLKKTS*QW 399
LH + + +FR N CR +L W + K + W
Sbjct: 24 LHEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSW 58
>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
Length = 718
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 503 LHVEFRKFFRTTNPCRTLLLFWVWTSYLKKTS*QW 399
LH + + +FR N CR +L W + K + W
Sbjct: 167 LHEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSW 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,712,788
Number of Sequences: 59808
Number of extensions: 469129
Number of successful extensions: 1274
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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