Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30829
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   261   4e-70
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    31   1.1  
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    29   2.5  
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    28   5.9  
AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm rec...    28   7.8  
AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm rec...    28   7.8  
AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm rece...    28   7.8  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  261 bits (639), Expect = 4e-70
 Identities = 132/176 (75%), Positives = 142/176 (80%)
 Frame = -1

Query: 714 KKGSITSVQAIYVXXXXXXXXXXXXXXAHLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
           KKGSITSVQAIYV              AHLDAT VL R IAEL IYPAVDPLDSTSRIMD
Sbjct: 359 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDPLDSTSRIMD 418

Query: 534 PNIIGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEEDKLTVARARKIQRFLSQPFQ 355
           PN++G  HY++ARGVQKI QDYKSLQDIIAILGMDEL EEDKLTV+RARKIQRFLSQPFQ
Sbjct: 419 PNVVGQNHYDIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQ 478

Query: 354 VAEVFTGHAGKLVPLEETIKGFSKILAGDYDPLPEVAFYMVGPIEEVVAKAETLAK 187
           VAEVFTGH GK V LEETI+GF+ IL G+ D LPEVAFYM G I++V  KAE LAK
Sbjct: 479 VAEVFTGHQGKFVSLEETIRGFTMILKGELDHLPEVAFYMQGGIDDVFKKAEELAK 534


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
 Frame = -1

Query: 582 IYPAVDPLDSTSRIM----DPNIIGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEE 415
           IYP +D L S SR+M       +   +H +++  +   +   K +Q + A++G++ L  +
Sbjct: 380 IYPPIDVLPSLSRLMKSAVGEGMTREDHSDLSNQLYACYAMGKDVQAMKAVVGVEALSPD 439

Query: 414 DKLTVARARKIQR-FLSQ 364
           D L +    K ++ F++Q
Sbjct: 440 DLLYLEFLAKFEKNFIAQ 457


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = -1

Query: 582 IYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEE 415
           IYP ++ L S SR+M   I       +H +V+  +   +   K +Q + A++G + L  +
Sbjct: 368 IYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSD 427

Query: 414 DKLTVARARKIQR-FLSQ 364
           D L +    K ++ F++Q
Sbjct: 428 DLLYLEFLTKFEKNFITQ 445


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 602 EPLLNWVSTQLWILLTQHPVSWTPI-LLELSTTM-LHVEFRK 483
           + L N++  Q W++L  HP  +TP+   EL+  + L  EFRK
Sbjct: 20  QTLHNYIGEQ-WLMLFSHPADFTPVCTTELAELVKLAPEFRK 60


>AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform b protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 630 HLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
           H D  P  F       IYPAVDPL     ++D
Sbjct: 277 HFDIEPASFLVTIFYSIYPAVDPLPIIFIVVD 308


>AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform a protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 630 HLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
           H D  P  F       IYPAVDPL     ++D
Sbjct: 277 HFDIEPASFLVTIFYSIYPAVDPLPIIFIVVD 308


>AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical
           protein Y9C9A.5 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 630 HLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
           H D  P  F       IYPAVDPL     ++D
Sbjct: 277 HFDIEPASFLVTIFYSIYPAVDPLPIIFIVVD 308


>AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 168 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 630 HLDATPVLFRAIAELGIYPAVDPL 559
           H D  P  F       IYPAVDPL
Sbjct: 277 HFDIEPASFLVTIFFSIYPAVDPL 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,748
Number of Sequences: 27780
Number of extensions: 362682
Number of successful extensions: 799
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)