Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30829
(723 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 241 3e-64
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 241 3e-64
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 241 3e-64
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 32 0.33
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 32 0.33
At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protei... 32 0.44
At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protei... 32 0.44
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 31 0.58
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 31 0.58
At3g50150.1 68416.m05482 expressed protein contains Pfam profile... 30 1.8
At3g22720.1 68416.m02866 F-box family protein similar to F-box p... 29 3.1
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-... 28 7.2
At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing prote... 28 7.2
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom... 27 9.5
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 241 bits (590), Expect = 3e-64
Identities = 122/178 (68%), Positives = 138/178 (77%)
Frame = -1
Query: 714 KKGSITSVQAIYVXXXXXXXXXXXXXXAHLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
KKGSITSVQAIYV AHLDAT VL R I+ELGIYPAVDPLDSTSR++
Sbjct: 377 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLS 436
Query: 534 PNIIGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEEDKLTVARARKIQRFLSQPFQ 355
P+I+G EHYN ARGVQK+ Q+YK+LQDIIAILGMDEL E+DKLTVARARKIQRFLSQPF
Sbjct: 437 PHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFH 496
Query: 354 VAEVFTGHAGKLVPLEETIKGFSKILAGDYDPLPEVAFYMVGPIEEVVAKAETLAKNA 181
VAE+FTG GK V L+E I F +L G YD L E +FYMVG I+EVVAKAE +AK +
Sbjct: 497 VAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIAKES 554
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 241 bits (590), Expect = 3e-64
Identities = 122/178 (68%), Positives = 138/178 (77%)
Frame = -1
Query: 714 KKGSITSVQAIYVXXXXXXXXXXXXXXAHLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
KKGSITSVQAIYV AHLDAT VL R I+ELGIYPAVDPLDSTSR++
Sbjct: 380 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLS 439
Query: 534 PNIIGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEEDKLTVARARKIQRFLSQPFQ 355
P+I+G EHYN ARGVQK+ Q+YK+LQDIIAILGMDEL E+DKLTVARARKIQRFLSQPF
Sbjct: 440 PHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFH 499
Query: 354 VAEVFTGHAGKLVPLEETIKGFSKILAGDYDPLPEVAFYMVGPIEEVVAKAETLAKNA 181
VAE+FTG GK V L+E I F +L G YD L E +FYMVG I+EVVAKAE +AK +
Sbjct: 500 VAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIAKES 557
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 241 bits (590), Expect = 3e-64
Identities = 122/178 (68%), Positives = 138/178 (77%)
Frame = -1
Query: 714 KKGSITSVQAIYVXXXXXXXXXXXXXXAHLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
KKGSITSVQAIYV AHLDAT VL R I+ELGIYPAVDPLDSTSR++
Sbjct: 377 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLS 436
Query: 534 PNIIGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEEDKLTVARARKIQRFLSQPFQ 355
P+I+G EHYN ARGVQK+ Q+YK+LQDIIAILGMDEL E+DKLTVARARKIQRFLSQPF
Sbjct: 437 PHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFH 496
Query: 354 VAEVFTGHAGKLVPLEETIKGFSKILAGDYDPLPEVAFYMVGPIEEVVAKAETLAKNA 181
VAE+FTG GK V L+E I F +L G YD L E +FYMVG I+EVVAKAE +AK +
Sbjct: 497 VAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVAKAEKIAKES 554
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 32.3 bits (70), Expect = 0.33
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Frame = -1
Query: 714 KKGSITSVQAIYVXXXXXXXXXXXXXXAHLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
+KGSIT + + + + + R + IYP ++ L S SR+M
Sbjct: 321 RKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMK 380
Query: 534 PNI----IGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEEDKLTVARARKIQR-FL 370
I +H +V+ + + K +Q + A++G + L ED L + K +R F+
Sbjct: 381 SAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFV 440
Query: 369 SQ 364
+Q
Sbjct: 441 AQ 442
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 32.3 bits (70), Expect = 0.33
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Frame = -1
Query: 714 KKGSITSVQAIYVXXXXXXXXXXXXXXAHLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
+KGSIT + + + + + R + IYP ++ L S SR+M
Sbjct: 321 RKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMK 380
Query: 534 PNI----IGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEEDKLTVARARKIQR-FL 370
I +H +V+ + + K +Q + A++G + L ED L + K +R F+
Sbjct: 381 SAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFV 440
Query: 369 SQ 364
+Q
Sbjct: 441 AQ 442
>At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protein
low similarity to beta-alanine synthase [Drosophila
melanogaster] GI:14334063; contains Pfam profile
PF00795: hydrolase, carbon-nitrogen family
Length = 326
Score = 31.9 bits (69), Expect = 0.44
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = -1
Query: 345 VFTGHAG-KLVPLEETIKGFSKILAGDYDPLPEVAFY----MVGPIEEVVAKAETLAKNA 181
V GHAG +VPL + + +I+ ++ P ++ FY + GP E+VA+A+ ++
Sbjct: 230 VMQGHAGANVVPLVASNRIGKEIIETEHGP-SQITFYGTSFIAGPTGEIVAEADDKSEAV 288
Query: 180 *TGQYCVIILKSCR 139
Q+ + ++KS R
Sbjct: 289 LVAQFDLDMIKSKR 302
>At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protein
low similarity to beta-alanine synthase [Drosophila
melanogaster] GI:14334063; contains Pfam profile
PF00795: hydrolase, carbon-nitrogen family
Length = 299
Score = 31.9 bits (69), Expect = 0.44
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = -1
Query: 345 VFTGHAG-KLVPLEETIKGFSKILAGDYDPLPEVAFY----MVGPIEEVVAKAETLAKNA 181
V GHAG +VPL + + +I+ ++ P ++ FY + GP E+VA+A+ ++
Sbjct: 203 VMQGHAGANVVPLVASNRIGKEIIETEHGP-SQITFYGTSFIAGPTGEIVAEADDKSEAV 261
Query: 180 *TGQYCVIILKSCR 139
Q+ + ++KS R
Sbjct: 262 LVAQFDLDMIKSKR 275
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 31.5 bits (68), Expect = 0.58
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Frame = -1
Query: 714 KKGSITSVQAIYVXXXXXXXXXXXXXXAHLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
+KGSIT + + + + + R + IYP ++ L S SR+M
Sbjct: 320 RKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMK 379
Query: 534 PNI----IGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEEDKLTVARARKIQR 376
I +H +V+ + + K +Q + A++G + L ED L + K +R
Sbjct: 380 SAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFER 436
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 31.5 bits (68), Expect = 0.58
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Frame = -1
Query: 714 KKGSITSVQAIYVXXXXXXXXXXXXXXAHLDATPVLFRAIAELGIYPAVDPLDSTSRIMD 535
+KGSIT + + + + + R + IYP ++ L S SR+M
Sbjct: 319 RKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMK 378
Query: 534 PNI----IGAEHYNVARGVQKIFQDYKSLQDIIAILGMDELFEEDKLTVARARKIQR 376
I +H +V+ + + K +Q + A++G + L ED L + K +R
Sbjct: 379 SAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFER 435
>At3g50150.1 68416.m05482 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function; expression
supported by MPSS
Length = 509
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 433 HTQNSNNVLQGFVVLKNFLNSTCNIVVLSSNNIGVHDTG 549
HTQ+SNN+ + + N +NS+ ++ L + I H G
Sbjct: 384 HTQSSNNITSYIIFMDNLINSSQDVSYLHHDGIIEHWLG 422
>At3g22720.1 68416.m02866 F-box family protein similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; contains Pfam PF00646: F-box domain; contains
TIGRFAM TIGR01640 : F-box protein interaction domain
Length = 378
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Frame = -2
Query: 545 VSWTPILLELSTTMLHVEFRKF--------FRTTNPCRTLLLFWVWTSY 423
V W P L E L V++R++ + CR+ + W W SY
Sbjct: 114 VVWNPCLGETKWIQLKVDYRRYVSIFALGYIQNNESCRSYKILWTWYSY 162
>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Homo sapiens] GI:5410257; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 823
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 335 PVNTS--ATWKGCERNL*ILRARATVNLSSSNNSS 433
PV TS +TWK RN I + + LSSSN S
Sbjct: 10 PVTTSTLSTWKPAARNKTIPPPESVIELSSSNEGS 44
>At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing protein
similar to Rieske iron-sulfur protein Tic55 from Pisum
sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 539
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/28 (32%), Positives = 21/28 (75%)
Frame = +1
Query: 415 FFK*LVHTQNSNNVLQGFVVLKNFLNST 498
+F+ ++H ++ +NV++ F + KN L++T
Sbjct: 460 YFRHIIHCRSCSNVIKSFELWKNILSAT 487
>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 607
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 322 TSTP*GNHQRILQNFSRG 269
TS P NHQ++ QN+S G
Sbjct: 363 TSNPHANHQKVQQNYSNG 380
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,239,630
Number of Sequences: 28952
Number of extensions: 329526
Number of successful extensions: 690
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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