Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30826
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 33 0.068
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 31 0.16
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 28 1.5
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 28 1.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.4
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 4.4
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 27 4.4
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 32.7 bits (71), Expect = 0.068
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +2
Query: 389 KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDY 568
+L S +L ++ S S S L+ + +E + + V++ CE F + Y
Sbjct: 144 ELNFSTEELSSFDTTLLNSDTSKLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSY 203
Query: 569 LSGEFLDEQYKGQRD-LAGKASTLKKMMDK 655
L E KG+ D L + + LK+ +DK
Sbjct: 204 LKENLKSELRKGRLDELMCENTALKEKIDK 233
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 536 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM 649
S DYHL++ L E YK QR GK LK+++
Sbjct: 31 SHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRIL 68
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 470 EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGEFLDEQYKGQRDL 616
E +L V N I ++KTC +S ND ++ DY+S + + K Q+DL
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFESK-QQDL 798
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 461 SALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 598
S L+ K +S+ N IR +I E++ H +S FL+E Y
Sbjct: 669 SQLKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 532 REQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDD-GQARRPRRVHLRQETPR 699
R +Q + PG L P+RT P P+R G+ PQ Q P+R ++ P+
Sbjct: 516 RTGMQPMMPG-LQQPMAPQRTGMQPMMPQRTGMQPQMTGFQQPMAPQRTGMQPMMPQ 571
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +1
Query: 505 QHPGGHQDLREQ---LQRLPPGRLLVRG--IPRRTVQGPARPRRQGLDPQEDD-GQARRP 666
Q PG Q + Q +Q + P R ++ P+RT P P+R G+ PQ Q P
Sbjct: 578 QMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAP 637
Query: 667 RRVHLRQETPR 699
+R ++ P+
Sbjct: 638 QRTGMQPMMPQ 648
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 583 PRRTVQGPARPRRQGLDPQEDD-GQARRPRRVHLRQETPR 699
P+RT P P+R G+ PQ Q P+R ++ P+
Sbjct: 637 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQ 676
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 583 PRRTVQGPARPRRQGLDPQEDD-GQARRPRRVHLRQETPR 699
P+RT P P+R G+ PQ Q P+R ++ P+
Sbjct: 703 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQ 742
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 250 NPVLSHG-GLLLDRYGEPPRLREAILRC 330
+P L +G G+L DRYG EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 482 KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 595
++E DV S++ + DYH LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,189
Number of Sequences: 5004
Number of extensions: 58709
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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