Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30823
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 31 0.19
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 31 0.25
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 28 1.4
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.8
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro... 27 3.1
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 3.1
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 27 4.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 4.1
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 26 5.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 7.2
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 9.5
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 9.5
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 9.5
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 9.5
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 9.5
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 31.1 bits (67), Expect = 0.19
Identities = 18/62 (29%), Positives = 35/62 (56%)
Frame = +2
Query: 605 RSSWKEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWGVHRQTRDREYDLEERQKKQDYD 784
R S E++K L +++ LT+E + V +L ++ + L + R + +E++KK+ D
Sbjct: 114 RISILEKEKEDLQRKMEELTVESMEVVRLTRQVETLSTQYSIQRSQWVREDEKKKKEIQD 173
Query: 785 LK 790
LK
Sbjct: 174 LK 175
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 30.7 bits (66), Expect = 0.25
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Frame = +1
Query: 448 EEKRQRLEEAEKKRQAMLQA----MKDASKTGPNFTIQKKSENFGLSNAQLER--NKTKE 609
EEKR+++EE++K + +LQA +KD + +K+ E S+A ER N+ K
Sbjct: 138 EEKRRKIEESDKWHRVLLQAEGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEKKA 197
Query: 610 QL---ERGEEDLPVHPHQAADHRGSL-RRQTPTE 699
L +R EE+L +G +++ P++
Sbjct: 198 MLMRQQRREENLKKRRESKKSKKGKAPKKKKPSK 231
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/51 (25%), Positives = 31/51 (60%)
Frame = +1
Query: 490 QAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLERGEEDLPV 642
Q+ ++M+ + ++ ++K+ NF + ++++ KTK+ L ++DLPV
Sbjct: 581 QSRYESMQQREEKINSWERERKANNFFRGHIEIDK-KTKDFLNNSKDDLPV 630
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 725 RQTRDREYDLEERQKKQDYDLKNS 796
R T D +D+EE +K +++DL+ S
Sbjct: 358 RLTSDSNFDIEELEKDEEHDLRRS 381
>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +1
Query: 538 FTIQKKSENFGLSNAQLERNKTKEQLE-RGEEDLPVHPHQA 657
+ + KK++N +SN++ ++N T+ L+ + + LP+H +QA
Sbjct: 11 YKLIKKNKNPKISNSK-KKNSTRPALQDKTNQTLPIHQNQA 50
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 532 PNFTIQKKSENFGLSNAQLERNKTKEQLERGEEDL 636
P FTI++K +NF ++N ERN ++L + L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSL 521
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +2
Query: 560 KTSV*AMPSWSATRPRSSW---KEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWGVHRQ 730
KT++ +P WS RP+ W + +K I K T+E + +++ ++L + +
Sbjct: 36 KTTI--LPRWSFGRPKRPWSCTQHLRKTRTVIIEKRATLEEVK-ERMEYWRRQL--LEPE 90
Query: 731 TRDREYDLEERQKKQDYDLKNSK 799
EY L+ER ++ +L+ K
Sbjct: 91 KGSEEYSLKERVERYHQELEAKK 113
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 294 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 178
P+FA + L LF+Q+ P + + FW S+ L+ +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 62 SLGTGSWTGSTATLECGAAA 3
++GTG W GS TL G AA
Sbjct: 96 AIGTGVWVGSKNTLREGGAA 115
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 442 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 618
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 636 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEENAKREAEEKVKRETE 694
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 442 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 618
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 620 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEENAKREAEEKAKREAE 678
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +1
Query: 520 SKTGPNFTIQKKSENFGLSNAQLERNKTKEQLERGEEDLPVHPHQAADHRGS 675
++TG F+I +++ + S + RN + + + +D P H + ++ R S
Sbjct: 1022 NETGRRFSILREAGSLRESMSGSSRNSSGDYTDSMSQDAPNHTTEPSERRDS 1073
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 62 SLGTGSWTGSTATLECGAAA 3
++GTG W GS+ +L G AA
Sbjct: 96 AIGTGVWVGSSKSLYRGGAA 115
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +2
Query: 587 WSATRPRSSWKEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWGVHRQTRDREYDLEERQ 766
+ A + WK+ KK+ ++P E K++++ + L +Q + R+ +L +
Sbjct: 61 FGAEKVLKKWKKRKKLIAKGLLEPFDAEDNEAKKMKREKEIL---RQQRQKRKSELTQLS 117
Query: 767 KKQDYDLKNSKK 802
+K K +K
Sbjct: 118 QKVKEKFKKMRK 129
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 560 SLFFWMVKLGPVLLASFMAWSIAW 489
SL+FW L P +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 109 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNV 14
CW I G S L+ AL+L PA+ NV
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNV 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,846
Number of Sequences: 5004
Number of extensions: 33641
Number of successful extensions: 137
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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