Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30823
(805 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 38 0.006
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 38 0.006
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 34 0.14
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 34 0.14
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 33 0.18
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 33 0.18
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 32 0.55
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 31 0.73
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 31 1.3
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 30 1.7
Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical p... 29 2.9
U46673-1|AAC48153.4| 1003|Caenorhabditis elegans Insulin recepto... 29 3.9
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 29 3.9
AY064245-1|AAL40865.1| 1003|Caenorhabditis elegans insulin recep... 29 3.9
AF025458-4|AAB70975.4| 374|Caenorhabditis elegans Hypothetical ... 29 3.9
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 29 5.1
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 28 6.8
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 28 6.8
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 28 6.8
AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ... 28 6.8
Z78016-4|CAC42335.1| 359|Caenorhabditis elegans Hypothetical pr... 28 9.0
U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical pr... 28 9.0
AF016674-4|AAB66130.1| 287|Caenorhabditis elegans Hypothetical ... 28 9.0
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 38.3 bits (85), Expect = 0.006
Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 7/150 (4%)
Frame = +1
Query: 199 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 378
EG+ + + + +D +L++Y R +R QA+RK++
Sbjct: 46 EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105
Query: 379 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 558
EEK+++ EE KK Q M+ + G NF IQKK
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164
Query: 559 ENFGLSN-------AQLERNKTKEQLERGE 627
E+ G+ + A+ E TKEQ E +
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQEEAK 194
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 617 KEEKKISLS-IRIKPLTIEGLSVDKLRQKAQELWGVHRQTRDREYDLEERQKKQDYDLK 790
+E K ++++ IR + + ++ K +EL + ++YDLE+R ++Q+YDLK
Sbjct: 191 EEAKSVAMAGIRKSIAEASTILPNDMKAKIKELHQRICKLEAQKYDLEKRHERQEYDLK 249
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 38.3 bits (85), Expect = 0.006
Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 7/150 (4%)
Frame = +1
Query: 199 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 378
EG+ + + + +D +L++Y R +R QA+RK++
Sbjct: 46 EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105
Query: 379 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 558
EEK+++ EE KK Q M+ + G NF IQKK
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164
Query: 559 ENFGLSN-------AQLERNKTKEQLERGE 627
E+ G+ + A+ E TKEQ E +
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQEEAK 194
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 617 KEEKKISLS-IRIKPLTIEGLSVDKLRQKAQELWGVHRQTRDREYDLEERQKKQDYDLK 790
+E K ++++ IR + + ++ K +EL + ++YDLE+R ++Q+YDLK
Sbjct: 191 EEAKSVAMAGIRKSIAEASTILPNDMKAKIKELHQRICKLEAQKYDLEKRHERQEYDLK 249
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/62 (25%), Positives = 35/62 (56%)
Frame = +2
Query: 605 RSSWKEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWGVHRQTRDREYDLEERQKKQDYD 784
+ ++ K+ L+ + + GL + L+++ + L + +YDLE+R+++QDYD
Sbjct: 204 KEQMEDAKRNFLAAVCRVQDVSGLLPNDLKERIRGLHARIVKLEAEKYDLEKRRERQDYD 263
Query: 785 LK 790
+K
Sbjct: 264 MK 265
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/62 (25%), Positives = 35/62 (56%)
Frame = +2
Query: 605 RSSWKEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWGVHRQTRDREYDLEERQKKQDYD 784
+ ++ K+ L+ + + GL + L+++ + L + +YDLE+R+++QDYD
Sbjct: 204 KEQMEDAKRNFLAAVCRVQDVSGLLPNDLKERIRGLHARIVKLEAEKYDLEKRRERQDYD 263
Query: 785 LK 790
+K
Sbjct: 264 MK 265
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/58 (25%), Positives = 34/58 (58%)
Frame = +2
Query: 617 KEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWGVHRQTRDREYDLEERQKKQDYDLK 790
++ K+ L++ K + L + L+++ + + + +YDLE+R+++Q+YDLK
Sbjct: 113 EDAKRAFLNVVCKAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLK 170
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/58 (25%), Positives = 34/58 (58%)
Frame = +2
Query: 617 KEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWGVHRQTRDREYDLEERQKKQDYDLK 790
++ K+ L++ K + L + L+++ + + + +YDLE+R+++Q+YDLK
Sbjct: 217 EDAKRAFLNVVCKAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLK 274
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 442 DIEEKRQRLEEAEKKRQA-MLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLE 618
++EE R EE K ++A +LQ ++ + + QKK E L + Q + K+
Sbjct: 79 EMEESRNDTEEVMKMKEAELLQGVERRRRNVEKWRAQKKKEELDLQSEQSDEKSEKKPWN 138
Query: 619 RGEED 633
+ED
Sbjct: 139 LEDED 143
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/84 (23%), Positives = 42/84 (50%)
Frame = +1
Query: 448 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLERGE 627
+EK+Q+L+E EK+R+ + Q ++ ++ +E+ +++ ++ K +E R
Sbjct: 216 KEKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEEDSRKDQRKPREDRRRSV 275
Query: 628 EDLPVHPHQAADHRGSLRRQTPTE 699
E Q D R RR++P +
Sbjct: 276 E----RQDQREDRRD--RRRSPED 293
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/98 (26%), Positives = 43/98 (43%)
Frame = +2
Query: 512 KMPARPDPTSPSKRRAKTSV*AMPSWSATRPRSSWKEEKKISLSIRIKPLTIEGLSVDKL 691
K A T+P+ S P +S KEE K + K EG DK
Sbjct: 27 KAGAVKSSTAPAPAPKADSKMKAPEEKEKSKKSEKKEEPKKEEEKKEKSKKSEGKKSDKK 86
Query: 692 RQKAQELWGVHRQTRDREYDLEERQKKQDYDLKNSKKD 805
+K +E ++ ++ + + ++ +KK+D D K+ KKD
Sbjct: 87 EEKKEE----KKEEKEDKKEEKKEEKKED-DKKDEKKD 119
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 686 KLRQKAQELWGVHRQTRDREYDLEERQKKQDYDLK 790
+L+ K +EL + +YDLE+R ++Q+YD+K
Sbjct: 1051 ELKAKIKELHQRICKLETEKYDLEKRHERQEYDMK 1085
>Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical
protein W02D9.3 protein.
Length = 386
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +1
Query: 448 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLERGE 627
EE+ + A++++ L+ M++ KT + QKK F S + +N K + +
Sbjct: 169 EERIPFQQRADEEKVKYLELMEEYKKTDSHKEFQKKRAKFLSSQSNGSKNAKKRRQADSD 228
Query: 628 EDLP 639
+D P
Sbjct: 229 DDTP 232
>Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical
protein C54D10.12 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +1
Query: 448 EEKRQRLEEAEKKRQAMLQAMKDAS------KTGPNFTIQKKSENFGLSNAQLERNKTKE 609
EEK Q++ E E+K Q +L K+ + + + I++K E N Q R K E
Sbjct: 208 EEKLQQIREKERKLQELLLRQKEEAEEEALRRLANDSEIEQKLEKIRYENEQQARQKDNE 267
Query: 610 Q 612
Q
Sbjct: 268 Q 268
>U46673-1|AAC48153.4| 1003|Caenorhabditis elegans Insulin receptor
substrate homologprotein 1 protein.
Length = 1003
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 442 DIEEKRQR-LEEAEKKRQAMLQAMKDASK-TGPNFTIQKKSENFGLSNAQLERNKTKEQL 615
D+E ++Q + E+ R + LQ++K + TG + E++G R K Q
Sbjct: 359 DLENRKQESIRRPERPRVSTLQSVKPGKEETGLREALL---ESYGHL-----RKKNSTQS 410
Query: 616 ERGEEDLPVHPHQAADHRGSLRRQ 687
ERGE +P + +D+R LR Q
Sbjct: 411 ERGEIVVPEQERKMSDNRPRLRTQ 434
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/67 (25%), Positives = 37/67 (55%)
Frame = +1
Query: 442 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLER 621
D+E +++LEE+E ++ +LQ+ K + + +++ EN S+ E+ + K + +
Sbjct: 1397 DVEHLQKQLEESEVAKERILQSKKKIQQELEDSSME--LENVRASHRDSEKRQKKFESQM 1454
Query: 622 GEEDLPV 642
EE + V
Sbjct: 1455 AEERVAV 1461
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 638 LSIRIKPLTIEGLSVDKLRQKAQELWGVHRQTRDREYDLEERQKKQD 778
L ++KPL + D++R K EL + E+D E +KK D
Sbjct: 836 LFTKVKPLLQVTRTDDEIRAKDDELRATKERLLKMEHDFRENEKKLD 882
>AY064245-1|AAL40865.1| 1003|Caenorhabditis elegans insulin receptor
substrate-likeprotein protein.
Length = 1003
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 442 DIEEKRQR-LEEAEKKRQAMLQAMKDASK-TGPNFTIQKKSENFGLSNAQLERNKTKEQL 615
D+E ++Q + E+ R + LQ++K + TG + E++G R K Q
Sbjct: 359 DLENRKQESIRRPERPRVSTLQSVKPGKEETGLREALL---ESYGHL-----RKKNSTQS 410
Query: 616 ERGEEDLPVHPHQAADHRGSLRRQ 687
ERGE +P + +D+R LR Q
Sbjct: 411 ERGEIVVPEQERKMSDNRPRLRTQ 434
>AF025458-4|AAB70975.4| 374|Caenorhabditis elegans Hypothetical
protein C01B12.2 protein.
Length = 374
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 451 EKRQRLEEAEKKRQAMLQAMKDASKTGP----NFTIQKKSENFGLSNAQLERNKTKEQLE 618
E ++R EEAE+K Q A+K +T N TIQ K+ L +E + L
Sbjct: 220 ENQKRQEEAERKLQEKQNAIKCLMETDSVTFWNQTIQSKTSTVVLDRISMELGSLAQNLI 279
Query: 619 RGEE 630
G +
Sbjct: 280 SGRD 283
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 442 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLER 594
D E+ ++ ++E EK + L S GP T +K+ +NF + + R
Sbjct: 514 DFEDMKEGVKEKEKVKDVDLNLAGWGSWVGPGMTEKKRRQNFVIKAKEKRR 564
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 451 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLERGEE 630
E+R++LEE+E RQA L +++ E L +LE K + + R EE
Sbjct: 337 ERRRKLEESETARQAELDRQATIYAEQERMAMERNRE---LERIRLEEKKRENERVRQEE 393
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 442 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLER 621
D++++ +E +E + + + AS T P QKK E E+ K++LER
Sbjct: 699 DVDDEESSVESSESPCTSSI-TISVASPTDPEAKRQKKKEKKKARQLSKEQQIKKQRLER 757
Query: 622 GE 627
E
Sbjct: 758 AE 759
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 442 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLER 621
D++++ +E +E + + + AS T P QKK E E+ K++LER
Sbjct: 699 DVDDEESSVESSESPCTSSI-TISVASPTDPEAKRQKKKEKKKARQLSKEQQIKKQRLER 757
Query: 622 GE 627
E
Sbjct: 758 AE 759
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 445 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLERG 624
+E+K++ +EE EKKR + + A IQ K + Q R++ KE L++
Sbjct: 869 LEDKQKIVEELEKKRDEL--GEEAAKVKARQAEIQSKLDGIFKELVQCHRDEAKESLQKR 926
Query: 625 EE 630
++
Sbjct: 927 QK 928
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 686 KLRQKAQELWGVHRQTRDREYDLEERQKKQDYDLK 790
+L+ K +EL + +YDLE+R ++Q+YD K
Sbjct: 217 ELKAKIKELHQRICKLETEKYDLEKRHERQEYDPK 251
>AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical
protein Y43F4B.6 protein.
Length = 1083
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 617 KEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWGVHRQTRDREYDLE--ERQKKQDYDLK 790
+E +K L +RI L E ++KLRQ+ +++ + +R L+ ERQ +D +
Sbjct: 525 RESEKTQLVVRISELETE---MNKLRQEGKKVTTAAKLAEERRQKLKDLERQHAEDKKVL 581
Query: 791 NSKK 802
N K
Sbjct: 582 NDMK 585
>Z78016-4|CAC42335.1| 359|Caenorhabditis elegans Hypothetical
protein R186.7 protein.
Length = 359
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +2
Query: 683 DKLRQKAQELWGVHRQTRDREYDLEERQKKQDYDL 787
D++RQ ++E G H+Q D EY+ EE +K ++ D+
Sbjct: 298 DRVRQISEER-GDHKQDEDDEYE-EEDEKNENEDI 330
>U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical
protein M02B7.5 protein.
Length = 640
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 221 SVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNAL 325
S+K +G N+STNG N+ RR+S N+L
Sbjct: 594 SMKLSNGSNSSAGSSNSSTNGVNNSSFRRLSFNSL 628
>AF016674-4|AAB66130.1| 287|Caenorhabditis elegans Hypothetical
protein C03H5.3 protein.
Length = 287
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 512 KMPARPDPTSPSKRRAKTSV*AMPS-WSATRPRSSWKEEKKISLSIR 649
K +RP P++P ++ A+TS M + A + + + +E++K+ +S+R
Sbjct: 8 KRVSRPSPSTPLEKPAETSTNPMETPKRAVKGQKTVEEKEKLPISLR 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.130 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,824,373
Number of Sequences: 27780
Number of extensions: 198035
Number of successful extensions: 776
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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