Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30823
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   4.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.8  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 478 EKKRQAMLQAMKDASKTGPNFTIQKKSE 561
           EKKRQA L  + +A + G   T ++  E
Sbjct: 313 EKKRQAFLDLLIEAGQNGVLLTDKEVKE 340


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 445 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFG 570
           I  + +R++  EK    +L  + +AS   PN  +     NFG
Sbjct: 327 INTRGERIQLTEKNGIDVLGNIMEASILSPNQNVYGDLHNFG 368


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 292 AVCAIR*CIPSTVHP 248
           A C I  C P TVHP
Sbjct: 357 AFCNIVSCSPQTVHP 371


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 710 LWGVHRQTRDREYDLEERQKKQDY 781
           LWG+H+   D  Y+   R  +  Y
Sbjct: 499 LWGLHKNKPDMNYETMGRALRYYY 522


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.130    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,046
Number of Sequences: 438
Number of extensions: 2298
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)