Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30822
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.54 
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    29   0.95 
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    28   1.3  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +2

Query: 497 IASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNLLSFYAKNRL 676
           + ST   S +S P SS+ +A S   T+    P  +V   T +SAS   +  ++       
Sbjct: 311 VNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSA 370

Query: 677 AAAGLAVENAT 709
           ++  L   N+T
Sbjct: 371 SSTPLTSVNST 381



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 22/91 (24%), Positives = 43/91 (47%)
 Frame = +2

Query: 437 TVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFT 616
           +V++ T T  S     + S   ST   S +S P SS+++ T+ + ++    P  +V   T
Sbjct: 310 SVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASST---PLTSVNSTT 366

Query: 617 RSSASGDDVNLLSFYAKNRLAAAGLAVENAT 709
            +SAS   +  ++  +    ++  L   N+T
Sbjct: 367 ATSASSTPLTSVNSTSATSASSTPLTSANST 397



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = +2

Query: 491 SRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNLLSFYAKN 670
           S + ST   S +S P SS+++ T+ + ++    P  +V   T +SAS   +  ++  +  
Sbjct: 442 SSVNSTTATSASSTPLSSVNSTTATSASST---PLTSVNSTTATSASSTPLTSVNSTSAT 498

Query: 671 RLAAAGLAVENAT 709
             ++  L   N+T
Sbjct: 499 SASSTPLTSANST 511


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 280 RSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEPIPYRFSNDAY 459
           ++  +K +ED T    A +    +  R  + R+++L P   +  Y YG+P P R S  A 
Sbjct: 178 KNHLSKIYEDHTSEKGASSVISSNITRQGIKRSRTL-PW-AVDPYRYGDPDPKRTSTSAD 235

Query: 460 IAK 468
           I++
Sbjct: 236 ISQ 238


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 580 GKKAFSNRRPLYKELSIRG*REPALVLREEQARGRRS 690
           GKK           L+ RG R+P L+LREE+ R R S
Sbjct: 390 GKKELEASSNDASRLTQRGRRDPGLLLREEKIRKRLS 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,317
Number of Sequences: 5004
Number of extensions: 58249
Number of successful extensions: 175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)