Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30822
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 32 0.57
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 29 3.0
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 29 3.0
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 29 3.0
06_03_0147 + 17236158-17236808 29 3.0
04_04_1633 + 34928139-34928511,34928700-34928774,34929385-349294... 29 3.0
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 29 3.0
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 3.0
12_01_0598 + 4890006-4890290,4890901-4890987 29 4.0
08_02_0463 + 17450935-17451180 29 4.0
01_06_0560 + 30244814-30244871,30244979-30245140,30245725-302457... 29 4.0
08_02_0600 - 19166283-19166851,19166988-19168839,19169347-191694... 29 5.3
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023 28 7.0
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 28 7.0
>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 159 RVRHESSYRPRCRTVNQFSRHAVGGPVGPTRRVEVTL 49
R R E+S + + +SRHAV PV TR ++V L
Sbjct: 1579 RTRSETSNKLHINSAGYYSRHAVPEPVSVTREIKVPL 1615
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 506 TIFPSITSQPRSSLDA-ATSRACTTPVRRPSPTVGHFTRSSAS 631
T P P SS+ A A A + +R PSP+VG FT+ AS
Sbjct: 296 TFSPYSQDNPSSSVVAPARISAKPSALRMPSPSVGFFTQGKAS 338
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 506 TIFPSITSQPRSSLDA-ATSRACTTPVRRPSPTVGHFTRSSAS 631
T P P SS+ A A A + +R PSP+VG FT+ AS
Sbjct: 315 TFSPYSQDNPSSSVVAPARISAKPSALRMPSPSVGFFTQGKAS 357
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/54 (40%), Positives = 27/54 (50%)
Frame = -3
Query: 714 LTVAFSTARPAAASLFFA*NESRFTSSPDAELLVKWPTVGEGLLTGVVHAREVA 553
LTV RPAAAS + +RF ++ D E L + P L GVV A E A
Sbjct: 18 LTVVIRLGRPAAAS-----DVARFATADDVERLCRIPGSPLRLSGGVVAASETA 66
>06_03_0147 + 17236158-17236808
Length = 216
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 318 SNSRRHCGFDPPGSLCGAARQVLSTTRHHL 407
S+ +RH G PG L A R L T HHL
Sbjct: 43 SHRQRHGGMPSPGDLAAALRGRLLTEDHHL 72
>04_04_1633 +
34928139-34928511,34928700-34928774,34929385-34929483,
34929736-34929908,34929990-34930066,34930182-34930301,
34930385-34930472,34930610-34930716,34930814-34930871
Length = 389
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 200 PWSSVSWTESLTDAA-QHWPSLP 265
PW VSW ES + QH+ SLP
Sbjct: 17 PWDDVSWAESTSSTVLQHYNSLP 39
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 379 WRAAPQSEPGGSKPQCRREFDGSHLRKSWLLRS 281
WR P P P+ RRE DG R+ W RS
Sbjct: 11 WRPVPHEAPPLPLPRLRRE-DGQEKRRRWPFRS 42
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 182 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTS 277
G G+A WSS S + T SLPSMTS
Sbjct: 264 GGGAAEAWSSASASSPPTTTTASRRSLPSMTS 295
>12_01_0598 + 4890006-4890290,4890901-4890987
Length = 123
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 421 RMNMSRWCRVVLRTWR-AAPQSEPGGSKPQCRREFDGSHLR 302
R+++ VL +WR A + PGGS+P E G+ R
Sbjct: 47 RLDVDERMGTVLASWRKTAGRGRPGGSRPAAEAEIQGADPR 87
>08_02_0463 + 17450935-17451180
Length = 81
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 309 IFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTEDHG-WADPDPHHVMRHIR 157
+F SL + +ID +DG AAS V EDHG WA P V ++
Sbjct: 6 LFLSLALSLSLSLIDLKDGWQTAASPPRRVDRKEDHGHWAAPSEDAVTNDVQ 57
>01_06_0560 +
30244814-30244871,30244979-30245140,30245725-30245786,
30246170-30246214,30246358-30246363,30246424-30246624,
30246735-30248024
Length = 607
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Frame = -3
Query: 393 WC*GLGAR----HHRASPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSD 226
W GLG H + + + V TG SL C + DG+ W +
Sbjct: 323 WTFGLGDNGQLGHGTTATICSPQPVDGLPTGSFLISLDCGLFHTTVVSSDGEVWCWGMER 382
Query: 225 SVQLTEDHGWADPDPHHVMRHIRVR 151
+ L D ++ D +R IRV+
Sbjct: 383 GLGLCPDASFSGVDSGDALRPIRVQ 407
>08_02_0600 -
19166283-19166851,19166988-19168839,19169347-19169415,
19171797-19171844,19173500-19173622
Length = 886
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 479 PYAASRIASTIFPSITSQPR----SSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVN 646
P A SR +F ++ + + +T A RRP+ T+GH +S A G+ V
Sbjct: 253 PLAGSRCWEDVFDAVANARSLVYIAGWSVSTDVALVRDPRRPAQTLGHLLKSKA-GERVA 311
Query: 647 LLSFYAKNRLAAAGL 691
+L +R AA GL
Sbjct: 312 VLLLVWDDR-AATGL 325
>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
Length = 432
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +2
Query: 479 PYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNLLSF 658
P S A+T P + + ++A T PV RPSP +F ++ G LL
Sbjct: 133 PVVTSNSATTTRPQLCAPYDDDIEATLRAMETNPVERPSP---YFLETTQGGRMTALLRL 189
Query: 659 YAKNRLAAAGLAVENATVK 715
A + A + T++
Sbjct: 190 VAATTVFLAAKYEDQYTLR 208
>01_01_1220 +
9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 527 SQPRSSLDAATSRACTTPVRRPSPTVGH--FTRSSASGDDVNLLSFYAKNRLAAAG 688
SQP S+ ++ + A T P VGH T S+A+G V +Y R AA G
Sbjct: 201 SQPGSASSSSAAGAVTATGGSPRDAVGHGTHTASTAAGAVVPGAGYYGLARGAAKG 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,518,446
Number of Sequences: 37544
Number of extensions: 493021
Number of successful extensions: 1721
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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