Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30822
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_22120| Best HMM Match : 7tm_1 (HMM E-Value=0.0013)                  29   3.1  
SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)           28   7.1  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)              28   7.1  
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)                     28   9.4  
SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  28   9.4  
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  

>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -3

Query: 357 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDG--QCWAASVSDSVQLTEDHGWADPD 184
           SP  Q+ ++G+ S  +  E++   G     DGRD   + W     DS + +E   W  P 
Sbjct: 581 SPPRQAEAIGS-SRDVGKETVRDGGRDSGRDGRDTGRESWRDGARDSGRDSERKRWPRPP 639

Query: 183 PHHVMRHIRVRHESSYRPRCRTVNQFSRHA 94
                RH      SS  P  +TV + S +A
Sbjct: 640 SPEPARHSHPDVTSSQSPALKTVKRPSDNA 669


>SB_22120| Best HMM Match : 7tm_1 (HMM E-Value=0.0013)
          Length = 313

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 610 VAYGWRRPSYRSSAR---TRGCRVQ*TSWLTRDRRKD 509
           + Y WR P YR++ R     GCR+     ++RDRR D
Sbjct: 276 LVYAWRLPKYRNAFREALCNGCRIV-ELVMSRDRRTD 311


>SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -3

Query: 357 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTED 205
           S  D    +GAN T +   S  C G Q  I+G D    A  V+DS +  +D
Sbjct: 194 SEEDNGSLLGAN-TEICHSSCHCQGCQSQIEGDDTPVAAREVADSCETIQD 243


>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 211 RELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRARS 363
           + ++R    RRP+L    V  F  + +    EDE   +RA    L HR RS
Sbjct: 90  KRMERKKKGRRPSLFRRFVGAFRNNPSNSEAEDEESELRAPPDYLSHRRRS 140


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = +2

Query: 440  VSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLD--AATSRACTTPVRRPSPTVGHF 613
            V+A T ++++     A+S I +    +I++   SS+   AAT+    +     +PTV HF
Sbjct: 1242 VTASTASVVTTTATIASSTITTPSLSAISTTTASSVQVSAATNFESFSAAIISNPTVQHF 1301

Query: 614  TRSSASGDDVNLLSFYAKNRLAAAGLAVEN 703
            + S+ S  ++     + K+ L  + +A+E+
Sbjct: 1302 SASAQSASEL-----FKKSSLELSIIAIES 1326


>SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)
          Length = 353

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +2

Query: 518 SITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNLLSFYAKNRLAAAGLAV 697
           S+T++   + + +++R CTTP+ + + TV    ++  S D  N           +  +A+
Sbjct: 128 SVTTEKSRTSEDSSNRNCTTPINQSTTTV--TVKNETSSDRKNSNQPIKTPCAESTPIAL 185

Query: 698 ENATVK 715
           EN  VK
Sbjct: 186 ENRLVK 191


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 612  LQGAQHQGMT*TCSRFTRRTGSRPPVWPSRMQQLNCYLG 728
            ++GA  +    TC RF  RT  +  +W  R +   C++G
Sbjct: 1069 IRGAMDEWQASTCLRFVPRTNQKDYLWFFRQKGCWCHVG 1107


>SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)
          Length = 398

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +2

Query: 518 SITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDDVNLLSFYAKNRLAAAGLAV 697
           S+T++   + + +++R CTTP+ + + TV    ++  S D  N           +  +A+
Sbjct: 173 SVTTEKSRTSEDSSNRNCTTPINQSTTTV--TVKNETSSDRKNSNQPIKTPCAESTPIAL 230

Query: 698 ENATVK 715
           EN  VK
Sbjct: 231 ENRLVK 236


>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 259 SAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEP 429
           + +D FL++ A          + ADTAA +  A   V  +K +  L T+ S ++  P
Sbjct: 661 TVLDSFLKASAAGGLGSVKAEVLADTAAALASANVQVVSSKVIGRLHTLISKTFISP 717


>SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 437 TVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFT 616
           +V+A T+T            I +T+  +      +   A  S A +T   RPSPT+ H +
Sbjct: 714 SVAAATVTSSPNVTTQTMPVITNTVTSTSIINSGTPTSAMASSASSTTEIRPSPTINHMS 773

Query: 617 RSSA 628
            +SA
Sbjct: 774 TTSA 777


>SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)
          Length = 2279

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 741  LRLGLQGSSLTVAFSTARPAAASLF 667
            L+LGL+G  ++   +TARP A S+F
Sbjct: 1019 LQLGLEGLGISFMDTTARPLAVSVF 1043


>SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +2

Query: 431 SRTVSAMTLT---LLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPT 601
           SR++ A +LT    + F+    A  I S+   ++  +P  ++ A T    T+P  + +PT
Sbjct: 182 SRSLQAHSLTDQLAIEFFL-LPAKTIVSSCLATLLVRPLETIPAPTLTTPTSPALKETPT 240

Query: 602 VGHFTRSSASGDDVNLLSFYAKNRL 676
            G  +  +A  D  +     AK RL
Sbjct: 241 PGLESAPAAMPDATDTAWVTAKARL 265


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 251 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 334
           W  L      +PK PR+ ++  V+FAPT
Sbjct: 465 WDQLEENDVASPKSPRVDQVVRVQFAPT 492


>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = -3

Query: 360 ASPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTEDHGWADP-- 187
           A P   + + G   T ++ +  G +   + +    G+C   S  ++  L+    W D   
Sbjct: 407 AKPAVTAANTGNMDTPVVNDR-GMYSCPKRMQTGPGECNPPSPKEANDLSRVKQWVDQLC 465

Query: 186 DPHHVMRHIRVRHESSYRPRCR 121
             H +    R +H  SYR  CR
Sbjct: 466 AAHELETVTRSKHRKSYRHACR 487


>SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 251 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 334
           W  L      +PK PR+ ++  V+FAPT
Sbjct: 164 WDQLEENDVASPKSPRVDQVVRVQFAPT 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,629,839
Number of Sequences: 59808
Number of extensions: 507455
Number of successful extensions: 1487
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)