Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30822
(755 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039038-8|AAM81097.1| 874|Caenorhabditis elegans Hypothetical ... 33 0.22
AF039038-7|AAM81098.1| 942|Caenorhabditis elegans Hypothetical ... 33 0.22
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet... 33 0.22
Z81528-1|CAB04282.1| 345|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL117203-9|CAB60420.3| 675|Caenorhabditis elegans Hypothetical ... 30 2.0
AF039713-13|AAB96719.2| 690|Caenorhabditis elegans Hypothetical... 30 2.0
Z78062-4|CAB01498.2| 341|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF098993-5|AAC67468.1| 325|Caenorhabditis elegans Hypothetical ... 29 4.7
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 28 6.2
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 28 6.2
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 28 6.2
AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical ... 28 6.2
>AF039038-8|AAM81097.1| 874|Caenorhabditis elegans Hypothetical
protein K06A5.8a protein.
Length = 874
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 234 PTPPSTGHLCRR*LLA-LRSNQDFRR*DPSNSRRHCGFDPPGSLCG 368
PTP HLC L L ++DF+ +PS++R C F+ LCG
Sbjct: 143 PTPEDYRHLCALLTLPKLSDHEDFKNWNPSSARVEC-FNKVNQLCG 187
>AF039038-7|AAM81098.1| 942|Caenorhabditis elegans Hypothetical
protein K06A5.8b protein.
Length = 942
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 234 PTPPSTGHLCRR*LLA-LRSNQDFRR*DPSNSRRHCGFDPPGSLCG 368
PTP HLC L L ++DF+ +PS++R C F+ LCG
Sbjct: 143 PTPEDYRHLCALLTLPKLSDHEDFKNWNPSSARVEC-FNKVNQLCG 187
>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
protein 3 protein.
Length = 1599
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = -2
Query: 157 GTSRVELPTEMSDGKSVQPSRCRWTCRADASCRSHSRIPWLMLVLS 20
GT+R LPT D KS+QP S H R PW LVL+
Sbjct: 922 GTTRSRLPT---DPKSLQPPAASTASTGSGSFVPHQRKPWTALVLA 964
>Z81528-1|CAB04282.1| 345|Caenorhabditis elegans Hypothetical
protein F35E2.1 protein.
Length = 345
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +1
Query: 271 DFLRSEATKTFEDETRRIRADTAALIHRA--RSVVPRAKSLAPLDTIYSYSYGEPIPYRF 444
+F+ K FE+E + I++ L +SV+P SL L + + +G P+P F
Sbjct: 215 NFVILRFVKHFENENKNIQSKIIQLTQSLLIQSVIPVIVSLPLLLLSFEFYFGIPMPSSF 274
Query: 445 SNDAYIAKLLVPLRSVADSI 504
+ Y L P SI
Sbjct: 275 GSTWYALTFLGPFLMPLSSI 294
>AL117203-9|CAB60420.3| 675|Caenorhabditis elegans Hypothetical
protein Y48C3A.12 protein.
Length = 675
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 503 STIFPSITSQPRSSLDAATSRACTTPVRRPSPT 601
ST + TS P +S+ AAT+ TT +PSPT
Sbjct: 616 STSTTAYTSTPTASIPAATAITTTTAPPKPSPT 648
>AF039713-13|AAB96719.2| 690|Caenorhabditis elegans Hypothetical
protein F57B10.1 protein.
Length = 690
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 485 AASRIASTIFPSITSQPRSSLDAATSRA-CTTPVRRPSPTVGHF-TRSSASGDDVN 646
A ++I + S +S SS+ ++TS + T+P+ R S T+G F + AS DD N
Sbjct: 504 AMAKIGARKGSSTSSSSASSVASSTSTSSATSPIYRTSRTLGAFEDQCDASSDDSN 559
>Z78062-4|CAB01498.2| 341|Caenorhabditis elegans Hypothetical
protein F16D3.6 protein.
Length = 341
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 271 DFLRSEATKTFED-ETRRIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEPIPYRFS 447
+F+ K FE+ +++RI+ + LI +SV+P SL L + + +G P+P F
Sbjct: 215 NFVILRFVKHFENIQSKRIQLTQSLLI---QSVIPVIVSLPLLLLSFEFYFGIPMPSSFG 271
Query: 448 NDAYIAKLLVPLRSVADSI 504
+ Y L P SI
Sbjct: 272 STWYALTFLGPFLMPLSSI 290
>AF098993-5|AAC67468.1| 325|Caenorhabditis elegans Hypothetical
protein T10B11.6 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 201 GWADPDPHHVMRHIRVRHESSYR 133
GWA +P H+ ++I+V ++ YR
Sbjct: 75 GWAGANPKHIDKYIKVYNDEGYR 97
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +1
Query: 208 LRELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIH--RARSVVPRAK 381
L+ L ++ + RRP +DD+ + F+D+ + A +H R +V +
Sbjct: 363 LKWLPKLLFMRRP------IDDY-----EEKFDDKKKPKDGKIALSVHAHRVSNVGNNIR 411
Query: 382 SLAPLDTIYSYSYGEPIPYRFSNDAYIAKLL 474
+ DTI Y P+ F N +IA+LL
Sbjct: 412 NATIDDTIQKMYYSPPVVKAFENICFIAELL 442
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +1
Query: 208 LRELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIH--RARSVVPRAK 381
L+ L ++ + RRP +DD+ + F+D+ + A +H R +V +
Sbjct: 363 LKWLPKLLFMRRP------IDDY-----EEKFDDKKKPKDGKIALSVHAHRVSNVGNNIR 411
Query: 382 SLAPLDTIYSYSYGEPIPYRFSNDAYIAKLL 474
+ DTI Y P+ F N +IA+LL
Sbjct: 412 NATIDDTIQKMYYSPPVVKAFENICFIAELL 442
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +1
Query: 208 LRELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIH--RARSVVPRAK 381
L+ L ++ + RRP +DD+ + F+D+ + A +H R +V +
Sbjct: 363 LKWLPKLLFMRRP------IDDY-----EEKFDDKKKPKDGKIALSVHAHRVSNVGNNIR 411
Query: 382 SLAPLDTIYSYSYGEPIPYRFSNDAYIAKLL 474
+ DTI Y P+ F N +IA+LL
Sbjct: 412 NATIDDTIQKMYYSPPVVKAFENICFIAELL 442
>AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical
protein K07D4.6 protein.
Length = 389
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2
Query: 506 TIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSASGDD---VNLLSFYAKNRL 676
T S T+Q +++ +TS TT +PT T S+ + DD V + +
Sbjct: 279 TTTTSTTTQTTTTVPTSTSTISTTSTTTTTPTTTTTTTSTTTSDDLLWVKITTTPPPPDT 338
Query: 677 AAAGLAVE----NATVKLLPWRPSR 739
L+ E N TV L+P RP +
Sbjct: 339 TEGRLSFEIEKSNNTVPLIPSRPHK 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,673,453
Number of Sequences: 27780
Number of extensions: 352132
Number of successful extensions: 1099
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -