Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30822
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23330.1 68414.m02917 expressed protein                             30   1.9  
At4g24460.1 68417.m03506 expressed protein                             29   4.4  
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i...    29   4.4  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    29   4.4  
At1g48560.1 68414.m05430 expressed protein                             28   5.8  
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ...    28   7.7  

>At1g23330.1 68414.m02917 expressed protein
          Length = 471

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 166 AHQGTSRVELP-TEMSDGKSVQPSRCRWTCRADASCRSHSRIPWLMLVLSFGF 11
           A  GT+R  +   +  DGKS++P      C+          IPWL    +FGF
Sbjct: 206 ALNGTTRTYIDGIQPEDGKSLKPISLLQICKLGVIMYDWIDIPWLKSYYNFGF 258


>At4g24460.1 68417.m03506 expressed protein 
          Length = 431

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 572 TTPVRRPSPTVGHFTRSSASGDDVNLLSFYAKNRLAAAGLAVENATVKLLPWRPSRKF 745
           T+P+RRP  +VG  T  S+   + NL+     N +    LAV N  +  L   P +++
Sbjct: 68  TSPMRRPRFSVGASTEESSIPSNRNLI---VANSVVIVALAVANRVLYKLALVPMKQY 122


>At2g21235.1 68415.m02522 bZIP protein-related similar to
           VirE2-interacting protein VIP1 [Arabidopsis thaliana]
           GI:7258340, tbZIP transcription factor [Arabidopsis
           thaliana] GI:17065884
          Length = 550

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 503 STIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSAS 631
           +++ P +   P  S D +    CTT   +PSPT   FT++S S
Sbjct: 32  TSLSPPLIRYPAGSPDFSPGPRCTT---QPSPTFSDFTQASPS 71


>At2g17930.1 68415.m02076 FAT domain-containing protein /
           phosphatidylinositol 3- and 4-kinase family protein
           contains Pfam profiles PF02259 FAT domain, PF00454
           Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
           domain
          Length = 3795

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 569 THARLPRPVNFLADS**KERLWMLSATLRRGTKSLAM 459
           THA LPRP  F      ++ +W  S  L+ G   LA+
Sbjct: 450 THAHLPRPQGFKGMR--EDEVWKASGVLKSGVHCLAL 484


>At1g48560.1 68414.m05430 expressed protein
          Length = 643

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 524 TSQPRSSLDAATSRACTTPVRRP-SPTVGHFTRS 622
           T  PR+S +++T +AC T VRR      GH ++S
Sbjct: 236 TRSPRTSSNSSTMKACETMVRRAVHEDDGHLSKS 269


>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
           protein / snRNP family protein contains similarity to
           U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
           sapiens] gi|2708307|gb|AAC51926
          Length = 786

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 182 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPV 319
           GSG+ +P S V      T  A  + S+PS  S AP Q  L+K+  +
Sbjct: 147 GSGATNPTSGV------TMGASTYSSIPSEASAAPSQTLLTKVSSI 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,027,720
Number of Sequences: 28952
Number of extensions: 335227
Number of successful extensions: 1001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)