Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30818
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.91 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.6  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    28   1.6  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   3.7  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    26   4.8  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    26   6.4  

>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 612 FTHNRISVCERKYSYQGHNWKTFSVNLIMTGSREV 716
           + +N+++VC+R YS   HN    S  LI   +R V
Sbjct: 153 YLNNKLAVCDRNYSEAQHNISKISPELIGIQTRLV 187


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 704  SSHDQIDTKGLPVMTLITILSFAYRYSIMCKLNVCFQFSSFIFVCALQKI 555
            SS+DQ  T   P++ + + L +A  Y    +     QF   IF C   +I
Sbjct: 930  SSNDQPSTGLYPILNMFSRLQYAQPYGNENEWTGLSQFEPLIFKCTASRI 979


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 656 ITILSFAYRYSIMCKLNVCFQFSSFIFVCALQKI 555
           +  +SF +   +     V   FS+FIF+C+L KI
Sbjct: 490 LQFISFRFNRRLSLLFAVLTYFSTFIFLCSLSKI 523


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 73  NIYMSVGLPTPVAGALMM 126
           +IY SV +PTP+ G+L++
Sbjct: 293 DIYASVSIPTPLGGSLLL 310


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 347 QYYTRKFVRIYLTHLLHLIWVMIENDYIEG*K-AINTRHLSFVIKVPFYLVL 195
           Q++    V IYL++   LI++ + +D IEG K  ++T   +  +   F +VL
Sbjct: 442 QHFFTACVEIYLSYCNTLIYLYLADDSIEGSKICLSTARAAIDVIKGFLVVL 493


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 574 FVHYKKYK-WHFEKHHM*LQYEIRKYDNTFQS*LAVMSNKQNCVI 443
           F  +  YK WH E  +   QYEI+ Y    Q+ L    N++NC I
Sbjct: 282 FESHLNYKAWHLEFENEAHQYEIKGYRLWLQNIL----NRENCQI 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,989
Number of Sequences: 5004
Number of extensions: 63925
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)