Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30818
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal m...    28   7.9  

>AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform b protein.
          Length = 626

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
 Frame = -1

Query: 248 INTRHLSF---------VIKVPFYLVLVVLVRFAGHLKLTLLFHTPTKILIINAPATGVG 96
           I T HLSF         +I++  +++ V+++  +G+  LT  FH P    ++    +G+G
Sbjct: 390 IETEHLSFGPPTNSNIRIIEMGGFMIFVLILFQSGYTDLT--FHLPRNKTLLITGDSGIG 447

Query: 95  SPTLI*ILA 69
             +L+ ++A
Sbjct: 448 KTSLMRVIA 456


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,476,960
Number of Sequences: 27780
Number of extensions: 346713
Number of successful extensions: 768
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)