Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30818
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    27   0.18 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   1.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.1  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   9.1  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 612 FTHNRISVCERKYSYQGHNWKTFSVNLIMTGSR 710
           F  ++ S+C+R++  QG N+    V+LI T  R
Sbjct: 269 FGDSKCSLCQRRFEEQG-NYSCLKVDLIFTRDR 300


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 260 PRYNHFQSSPKLNEVNE*DKFVQTCGY 340
           P+   F SS  +   NE DKF  T GY
Sbjct: 194 PKLTDFGSSVLIGAPNEIDKFYGTPGY 220


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +3

Query: 573 NKNE*GELETNI*FTHNRISVCERKYSYQGHNWKTFSVNLIMTGS 707
           N+ +  ELE+N+  + N +   ++    + + W  F   +  TG+
Sbjct: 462 NRKQISELESNMQISPNELKPNDKSQVIKQNTWTVFRDAITQTGT 506


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 68  YPLSTCIFYMDT 33
           YPL+ C++Y  T
Sbjct: 298 YPLTGCLYYFST 309


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 579 FCLCITKNINGILKN 535
           +C CI KN N + KN
Sbjct: 62  YCECILKNFNILDKN 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,312
Number of Sequences: 438
Number of extensions: 4638
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)