Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30818
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25730.1 68415.m03084 expressed protein                             29   4.2  
At1g49960.2 68414.m05605 xanthine/uracil permease family protein...    28   7.4  
At1g49960.1 68414.m05606 xanthine/uracil permease family protein...    28   7.4  
At2g43220.1 68415.m05372 DC1 domain-containing protein contains ...    27   9.8  

>At2g25730.1 68415.m03084 expressed protein 
          Length = 2464

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 538 FQNAIYIFCNAQTKMNEENWKQTFNLHIIEYRYANESIVI 657
           FQ+AI +          E WK+  ++ ++  RYA E+IV+
Sbjct: 540 FQDAISLISMQPIASTAEAWKRIEDIELMHMRYALEAIVL 579


>At1g49960.2 68414.m05605 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 398

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 677 GLPVMTLITILSFAYRYSIMCKLNVCFQFSSFIFVCAL 564
           GLP + ++ ILS    +   CK ++C QF + +F  A+
Sbjct: 189 GLPALIILIILSQYLPHLFKCKRSICEQF-AVLFTIAI 225


>At1g49960.1 68414.m05606 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 526

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 677 GLPVMTLITILSFAYRYSIMCKLNVCFQFSSFIFVCAL 564
           GLP + ++ ILS    +   CK ++C QF + +F  A+
Sbjct: 189 GLPALIILIILSQYLPHLFKCKRSICEQF-AVLFTIAI 225


>At2g43220.1 68415.m05372 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 538

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 576 CLCITKNINGILKNITCDYNMKYENMTTP 490
           CL   +N   +L+ + CDY++ Y+  T P
Sbjct: 387 CLACGENKLNVLRCVDCDYSLDYKCATLP 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,984,562
Number of Sequences: 28952
Number of extensions: 294742
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)