Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30814
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 39 5e-04
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 35 0.010
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 35 0.010
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 35 0.010
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 34 0.017
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 32 0.052
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 31 0.12
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 30 0.21
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.21
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 30 0.28
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 29 0.37
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 28 0.84
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 1.1
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 28 1.1
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.5
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 1.5
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 2.0
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 2.0
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 3.4
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 3.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.4
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 4.5
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 4.5
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 4.5
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 4.5
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 4.5
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 4.5
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 6.0
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 6.0
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 6.0
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 25 6.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 6.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 6.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 6.0
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 25 6.0
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 7.9
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 25 7.9
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 7.9
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 7.9
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 39.1 bits (87), Expect = 5e-04
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Frame = +1
Query: 157 EEAEKKRQA-MLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSI 333
E+ ++RQA +L+ +++ +K ++K E + +R+K K+QL+ K+
Sbjct: 562 EKVAQQRQAKLLEEIEEENKRKQERELKKIREK------EKKRDK-KKQLKLAKEEERQR 614
Query: 334 RIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRH 513
R E + L K QE E K E ++ E+ +K+Q+ + ++ +E+QKQ+ R
Sbjct: 615 REAERLAEQAAQKALEAKRQE--EARKKREEQRLKREQEKKQQELERQKREEKQKQKERE 672
Query: 514 KALKK 528
K LKK
Sbjct: 673 KKLKK 677
Score = 27.5 bits (58), Expect = 1.5
Identities = 27/136 (19%), Positives = 63/136 (46%)
Frame = +1
Query: 130 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 309
+IEE+ +R +E E K+ + +D K + K+ E +L ++ LE
Sbjct: 575 EIEEENKRKQERELKKIREKEKKRDKKK---QLKLAKEEERQRREAERLAEQAAQKALEA 631
Query: 310 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKE 489
+++ + + ++ + +K QEL + + ++ + E++ K+Q + K
Sbjct: 632 KRQEEARKKREEQRLKR----EQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKM 687
Query: 490 RQKQQLRHKALKKGLD 537
++Q+LR + K+ L+
Sbjct: 688 AREQRLREEEEKRILE 703
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 34.7 bits (76), Expect = 0.010
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Frame = +1
Query: 142 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE-QLEEEKK 318
++++LE K + LQ ++D KT + S + A LE + E ++EE K
Sbjct: 29 QKEKLEGDLKTQIKKLQRLRDQIKTWAS------SNDIKDKKALLENRRLIEAKMEEFKA 82
Query: 319 ISLSIRIKPLTIEGLSV-DKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQ 495
+ ++IK + EGLS+ KL K +E + I + +LE + + + + + LK
Sbjct: 83 VEREMKIKAFSKEGLSIASKLDPKEKEKQDTIQWISNAVEELERQAELIEAEAESLKATF 142
Query: 496 KQ 501
K+
Sbjct: 143 KR 144
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 34.7 bits (76), Expect = 0.010
Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Frame = +1
Query: 130 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 306
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 307 EEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKR--QDYDLKE 480
E+ K + K E K +++A+E + + E K + EE+ KR ++ +E
Sbjct: 631 EKAKREAEEKAKREAEE-----KAKREAEEKAKREAE-ENAKREAEEKAKREAEENAKRE 684
Query: 481 LKERQKQQLRHKALKK 528
+E+ K++ A +K
Sbjct: 685 AEEKVKRETEENAKRK 700
Score = 32.3 bits (70), Expect = 0.052
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Frame = +1
Query: 139 EKRQRLEEAEK-KRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLEEE 312
E++ RLE E KR+A QA ++A + +K K E + + E N K + EE+
Sbjct: 550 EEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEEN-AKREAEEK 608
Query: 313 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETE---KYDLEERQKR--QDYDLK 477
K + K E + + +KA+ E K E E K + EE+ KR ++ +
Sbjct: 609 AKREAEEKAK-REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKR 667
Query: 478 ELKERQKQQLRHKALKK 528
E +E+ K++ A ++
Sbjct: 668 EAEEKAKREAEENAKRE 684
Score = 27.9 bits (59), Expect = 1.1
Identities = 24/106 (22%), Positives = 43/106 (40%)
Frame = +1
Query: 130 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 309
+ EEK +R E KR+A +A ++A + +K + + + K + ++
Sbjct: 652 EAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEENAKRKAEEEGKREADK 711
Query: 310 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEE 447
+I S PL +VD +Q E + K + EK E
Sbjct: 712 NPEIKSS---APLASSEANVDTSKQTNATEPEVVDKTKVEKLKASE 754
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 34.7 bits (76), Expect = 0.010
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +1
Query: 271 QLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEER 450
+L+R K ++Q E+EKK+ +I ++ L +KL ++ L E + E L E+
Sbjct: 97 RLKREKERQQREQEKKLREQEKIAAKKMKEL--EKLEKERIRLQEQQRRKEERDQKLREK 154
Query: 451 QKRQDYDLKELKERQKQQLR-HKALKKGLD 537
++ Q +++ +++QQL+ + KG++
Sbjct: 155 EEAQRLRQEQILNKERQQLKLNNFFTKGVE 184
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 33.9 bits (74), Expect = 0.017
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 136 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 315
EEKR+++EE++K + +LQA + K N + KKS + + KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195
Query: 316 KISL 327
K L
Sbjct: 196 KAML 199
Score = 25.4 bits (53), Expect = 6.0
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 381 TEGPGTLGVHRQTRDREIRSRREAKE---TGLRLKRAQRKTKAATEAQ 515
TEG L + + RS+R+A E L L+R + K KA EA+
Sbjct: 4 TEGKNDLRAKLAEKIQTFRSQRKATEKVDRALLLQRRKEKAKARAEAK 51
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 32.3 bits (70), Expect = 0.052
Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Frame = +1
Query: 133 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 312
+ E +L+ ++K+ + D+ + +QK +S + E+ + ++EE
Sbjct: 73 LSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEEL 132
Query: 313 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKEL-KE 489
S+ + +E LS Q++Q + E K + E DL+E ++ ++ K +E
Sbjct: 133 TVESMEVVRLTRQVETLSTQYSIQRSQWVRE-DEKKKKEIQDLKELYEKSEHGAKNWERE 191
Query: 490 RQKQQLRHKALKKGLD 537
R+ Q + + K LD
Sbjct: 192 RETFQNQVSQMSKQLD 207
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 31.1 bits (67), Expect = 0.12
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 393 GTLGVHRQTRDREIRSRREAKETGLRLKRAQRKTKAATEAQSSQE 527
GTLG +Q +RE +S R+ K L K A+R+ + E + ++
Sbjct: 82 GTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEK 126
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 30.3 bits (65), Expect = 0.21
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +1
Query: 382 QKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLD 537
++AQE++ ++ L E D+E+ Q Q + L+E ++++LRH L+K LD
Sbjct: 906 KRAQEMYANVL-LGVE--DMEDDQFSQRCERMALREAERRKLRHGKLQKHLD 954
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.21
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 130 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 297
++EEK LE A+ Q ++ ++KD +K + ++ G+S+A L + K K
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSA-LSKKKKKR 220
Query: 298 QLEEEKKISLSIRIKPLT 351
+ +KK S I+ T
Sbjct: 221 NRKNQKKKSTKQNIEATT 238
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.28
Identities = 19/72 (26%), Positives = 42/72 (58%)
Frame = +1
Query: 286 KTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQD 465
KT E+LE+E + ++S +++ L G D +A +L + + YD E++QK ++
Sbjct: 168 KTAEELEKEDREAMSAKLQELIRRGTPADLA--EANKLMKVMAG-----YDTEQKQKYKE 220
Query: 466 YDLKELKERQKQ 501
+ L +L++ +++
Sbjct: 221 HVLVDLEKVKRK 232
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 29.5 bits (63), Expect = 0.37
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Frame = +1
Query: 415 KLETEKYDL---EERQKRQDYDLKELKERQKQQLRHKALKKG------LDPEALTGKHPP 567
KLETEK + EE+++++ D K+ KE K + K ++ LTG+ PP
Sbjct: 173 KLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKISKNEVDSSLIEASPLTGQVPP 232
Query: 568 K 570
K
Sbjct: 233 K 233
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 0.84
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 154 LEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 315
+EE E+ R+ + A D + G + +S+ G + +++ KTK+QLEEE+
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEEE 246
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 247 ENFGLSNAQLERNKT-KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLE 423
EN L + L+R K E+L + + + + + +T E L QKA E E I KLE
Sbjct: 366 ENTSLESQLLKREKQLSEELAKLRSTNAQLTDR-ITQESKKASFLEQKASEQEEVIRKLE 424
Query: 424 TEKYDLE 444
+ D++
Sbjct: 425 KDLADVD 431
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 27.9 bits (59), Expect = 1.1
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +1
Query: 133 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 312
+ EK+ + K A ++A + ASK+G T S+N L + +R + K E
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRENI 175
Query: 313 KKIS---LSIRIKPLTIEGLS---VDKLRQKAQELWECI 411
IS L I T +G++ ++ L+ + ++ EC+
Sbjct: 176 WAISEPELEAEIAWNTTQGITESDLESLKDEYEKFNECL 214
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 142 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 312
K + +++R A +QA+ D S +T + + +SEN GL N ++ +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 418 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPP 567
LE ++YD+EE D DL+EL ++ + + ++ ++ +A G+ P
Sbjct: 84 LELDRYDIEELD--DDNDLEELDIGARRAVDARLRRRDIELDAAAGRTKP 131
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 301 LEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKE 480
+EE +I +S+ +KPL I K A + V E + Y+ ++Q++++ + K+
Sbjct: 13 IEETNRIRISLGLKPLDISEEKPQKELSDA-SVKSSYVDQEQQAYENWKKQEQEEINRKK 71
Query: 481 LKERQK--QQLRHK 516
+E + ++LR K
Sbjct: 72 EEELKSKFEKLRQK 85
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 220 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGL 363
P FTI++K +NF ++N ERN ++L + ++ + ++ I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 372 QTPTEGPGTLGVHRQTRDREIRSRREAK 455
++ T+G GT V + TR + RSRR+ +
Sbjct: 203 ESSTKGNGTFTVSKTTRKNQPRSRRDPR 230
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 3.4
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Frame = +1
Query: 292 KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWEC--------IVKLETEK--YDL 441
+EQ E +K+ I+ + ++G V+K ++ E E K+E K Y L
Sbjct: 15 EEQRNEIEKLKNLTGIEEVHVDGAKVNKRKRTFDEQSEITKDYIEYDFSKIEDTKGGYLL 74
Query: 442 EE------RQKRQDYDLKELKERQKQQLRHKALKKGLDPE 543
EE R+K + +L+E +ERQK +LR L LDPE
Sbjct: 75 EEKKVEDLREKPAERELREQEERQK-KLRLAPL--NLDPE 111
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.4
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -3
Query: 406 TPRVPGPSVGVCRRRDPRWSAA*CGWTGRSSSPLPAAPWSC 284
TP VP S P S + TG SSSPLP+ SC
Sbjct: 302 TPTVPPTSTSSTSTPPPPASTS---STGTSSSPLPSTSTSC 339
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/82 (19%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +1
Query: 274 LERNKTKEQLEEEK----KISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYD- 438
++ ++K+Q+++ + K ++ P ++ D + + E + ++E EK +
Sbjct: 113 MQERQSKKQIQDRESDYQKQRYDRQLTPTRVDAFQPDGTQSNGRSYAEVMRQVELEKEER 172
Query: 439 ---LEERQKRQDYDLKELKERQ 495
+E Q+R++ LKE++E +
Sbjct: 173 RVHMELNQRRREGTLKEVEEEE 194
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/69 (21%), Positives = 36/69 (52%)
Frame = +1
Query: 133 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 312
I EKR LEE +++ + + + + K ++++++ E + + +LE K + + ++
Sbjct: 65 IIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERY---HQELEAKKLRRKQKKV 121
Query: 313 KKISLSIRI 339
K S R+
Sbjct: 122 NKEKNSPRL 130
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 433 YDLEERQKRQDYDLKELKERQKQQLRHKALKK 528
Y+ E+R KRQ+ E + R+K++ R A +K
Sbjct: 242 YEREQRAKRQEQFRLERENREKEKRRIAAQRK 273
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 136 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK--EQLEE 309
EEK +++EE E + + ++D K+ +++K S A+ +R+ + E LE+
Sbjct: 132 EEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILED 191
Query: 310 EKKI 321
+++I
Sbjct: 192 DEEI 195
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 4.5
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +1
Query: 232 IQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRI-KPLTIEGLSVDKLRQKAQELWEC 408
++K+ NA++E+ + +EEE++ I I + E + KL ++ +E+ E
Sbjct: 25 LEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEV-EK 83
Query: 409 IVKLETEKYDLEERQKRQDYDLKELKERQKQ 501
I++ + E+ + QK + +L+ + K+
Sbjct: 84 ILR-DEERIKKRKIQKNRAANLQRTLQPPKR 113
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 403 ECIVKLETEKYDLEERQKRQDYDLKELKERQKQ 501
E + KLE E+Y+ + + + +K LK+ Q +
Sbjct: 391 EAMTKLEEERYEFDRHIEATSWTIKSLKKIQNR 423
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 6.0
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Frame = +1
Query: 133 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS-ENFGLSNAQLERNKTKEQLEE 309
+E+ Q + +K + + + A+K + T +KK+ +++ ++E + K L +
Sbjct: 390 LEKFEQTERDISEKNEEVKSLREKAAKVKNDCTSEKKTRQSYEQQTVKIEE-QLKFLLNK 448
Query: 310 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECI--VKLETEKYDLEERQKRQDYDLKEL 483
EKK+ S IE LS +K + I KL +E DL R ++++ L ++
Sbjct: 449 EKKLKKS-------IEALSFEKSEAENSLSSHDIDSQKLNSEIADLSLRLQQEELSLDDI 501
Query: 484 KE 489
++
Sbjct: 502 RK 503
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 475 KELKERQKQQLRHKALKKGLDPEALTG 555
KE+K+RQ+ Q K +++GL +G
Sbjct: 461 KEIKDRQRTQKEEKVVQRGLTQVLTSG 487
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 6.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 248 SLFFWMVKLGPVLLASFMAWSIAW 177
SL+FW L P +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 364 SVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRH 513
S++ +R + EC ++ + +EER K D + + E QK++L H
Sbjct: 21 SLNPIRSSLIKQEECYKTVDGDDNPIEERIKACDAGI-QTSEEQKKELEH 69
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 6.0
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +1
Query: 166 EKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKP 345
EK +Q Q K +K + Q N +N LE ++ EEE++I ++ R K
Sbjct: 327 EKNQQRREQQDKGENKKRQDDVDQATDNN---TNTILEDDEKDNDEEEEEEI-VNAREKN 382
Query: 346 LTIEGLSVDKLRQKAQELWECIVKLE 423
L + + + +K E W+ +V+ E
Sbjct: 383 LLNQQFNWTAIVKKLGENWDQLVRFE 408
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 6.0
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +1
Query: 166 EKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKP 345
EK +Q Q K +K + Q N +N LE ++ EEE++I ++ R K
Sbjct: 327 EKNQQRREQQDKGENKKRQDDVDQATDNN---TNTILEDDEKDNDEEEEEEI-VNAREKN 382
Query: 346 LTIEGLSVDKLRQKAQELWECIVKLE 423
L + + + +K E W+ +V+ E
Sbjct: 383 LLNQQFNWTAIVKKLGENWDQLVRFE 408
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 277 ERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQ-ELWE 405
E N +EQ++E+KK+S S + +++ L D L +K + E++E
Sbjct: 491 ELNNLREQIKEQKKVSESTQ---SSLQSLQRDILNEKKKHEVYE 531
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 364 SVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKER 492
+V++L+ K +E + + K + EK D EE+ K++ KE+
Sbjct: 208 TVEELQNKGKEKQKELKKGKREKKDEEEKPKKKKQKKSSKKEK 250
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.0 bits (52), Expect = 7.9
Identities = 20/94 (21%), Positives = 47/94 (50%)
Frame = +1
Query: 217 GPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQE 396
G N +++S + + + ++ ++LE K +LS ++ + I+ D+ QKA+
Sbjct: 58 GNNDLEEQRSGSIDSKDKEKPLDEKVKELENANK-TLSDLVRRIQIQR---DEAEQKAEI 113
Query: 397 LWECIVKLETEKYDLEERQKRQDYDLKELKERQK 498
+ + E D+++R ++ D + +LKE +
Sbjct: 114 YNRDALNTKQEHLDIKKRLEKSDETVCKLKEENE 147
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 445 ERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPK 570
E++ Q L E+KER+K+ R K ++ E + + K
Sbjct: 36 EKRMEQKRKLDEIKEREKELKREKEEQRAAHAEKIRTRRQAK 77
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.0 bits (52), Expect = 7.9
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +1
Query: 136 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 315
+E+ ++LEE + + L+ ++ + KT QKK+ L E + KE E +K
Sbjct: 608 QEEMRKLEEKIESTKYGLETIQTSGKTIKQRIEQKKTRLMILREELQELDAIKE--EAQK 665
Query: 316 KISLSI 333
+IS S+
Sbjct: 666 QISQSL 671
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 7.9
Identities = 24/90 (26%), Positives = 42/90 (46%)
Frame = +1
Query: 268 AQLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEE 447
A L +N+ +L EE++ R+K + ++++L QK +EL + +K E E
Sbjct: 348 ASLLQNEEFHKLIEERQRQHEERLKRINANKKALEELNQKKRELAQQQLK-EQELL---- 402
Query: 448 RQKRQDYDLKELKERQKQQLRHKALKKGLD 537
QK ++ D K + +H LK D
Sbjct: 403 MQKIKETDRSGNKRLMLLETQHSLLKAEAD 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.127 0.332
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,663
Number of Sequences: 5004
Number of extensions: 21559
Number of successful extensions: 154
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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