Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30813
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.088
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    32   0.62 
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        31   0.82 
SB_29083| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                30   1.9  
SB_6360| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0092)            30   2.5  
SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)            29   3.3  
SB_10658| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)         29   4.4  
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           29   4.4  
SB_55022| Best HMM Match : 7tm_1 (HMM E-Value=0.011)                   28   7.6  
SB_7222| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.6  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   7.6  
SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)           28   7.6  

>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +3

Query: 357 DTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 500
           D +++  K    +  +LE +  DL+  +KRKD+ I+DLN  V D + K
Sbjct: 400 DELRKTKKKMQVQYEKLEHQLDDLKVQLKRKDVVIADLNKVVEDYKRK 447


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
 Frame = +3

Query: 354  EDTIKRVCKDYHERIARLE---DEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKK 524
            ED +++V K     +A L+   +EK D E +++   + +++LN+Q+ DL  +    TL++
Sbjct: 1901 EDELEKVRKKEVSLLATLDTLREEKKDQEQMLQDNGIRLAELNTQIQDLFEE--NKTLEE 1958

Query: 525  VSKYENKFAKLQKKAAEF-NFRNQLKVVKKK 614
              K  N   KL+  A E  +   +  V+K K
Sbjct: 1959 --KVSNDSYKLESAAGEVKSLERERSVLKNK 1987



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +3

Query: 345  DANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFV--KPTL 518
            D  E TIK + ++ +    R +DE  DL   V +K+ E   L++Q++DLR +    +  +
Sbjct: 3021 DIAESTIKNIKQEKN----RFQDEVNDLHGKVSQKNSENELLHAQLDDLRKQITGYQGNI 3076

Query: 519  KKVSKYENKFAKLQKKAAEFNFRNQLK 599
            K + +  N+  +  K   + N  +  K
Sbjct: 3077 KSLEENSNRLQERIKDLEDENLESHKK 3103


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
 Frame = +3

Query: 408  EDEKFD--LEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSK--YENKFAKLQKKAAE 575
            ++EKF   L  ++ RKD  I +LN+++  L+G + K T ++++K   EN+  K  K+  E
Sbjct: 997  QNEKFSETLNSVISRKDKAIDELNAKIRHLQGDYDK-TRRQLNKILVENENLKGSKEDLE 1055


>SB_29083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
 Frame = +3

Query: 333 KNIDDANEDT-IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKF-- 503
           + ID   E+  I    +D + RI   + E+ D+E I+  K+ ++  L  +   L+ +   
Sbjct: 30  QEIDQLKEENFILETARDEY-RIKADQLER-DVE-ILNEKNEQLQGLAEESQQLKDEMDV 86

Query: 504 VKPTLKKVSKYENKFAKLQKKAAEF-NFRNQLKVVKKKEFT 623
           ++   +KVSKYE+     +KK  E  + R Q+K +++K  T
Sbjct: 87  LRHMQEKVSKYESTIDMYKKKLEELSDMRKQMKAMEEKNVT 127


>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 354 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 482
           ED + R  +   +RI RLE    DL+ + +R     SD+N++V
Sbjct: 22  EDLMTRRFRGLEDRIGRLESTVSDLQLLQRRNGRFFSDINTRV 64


>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/86 (24%), Positives = 41/86 (47%)
 Frame = +3

Query: 333 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKP 512
           + +  +NE  + RV  D  E  + L+ +K DLE I ++ +    +L     +L+G     
Sbjct: 51  EELQTSNESELMRVRSDLEEMTSLLQSKKVDLEKIKEQNEKAAKEL----TELKGSL--- 103

Query: 513 TLKKVSKYENKFAKLQKKAAEFNFRN 590
              + ++ E+   +L+ K +E N  N
Sbjct: 104 -STREAEVESLQGQLKGKTSEINIMN 128


>SB_6360| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0092)
          Length = 107

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 381 DYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQ 560
           D + ++  L  +  DL+  V   D ++ DLN++V+DL  K V     KV     K   L 
Sbjct: 26  DLNAKVHDLNTKVHDLDTKVHDLDTKVHDLNTKVHDLNTK-VHDLNTKVHDLNTKVHDLN 84

Query: 561 KKAAEFN 581
            K  + N
Sbjct: 85  TKVHDLN 91


>SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)
          Length = 854

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/83 (21%), Positives = 41/83 (49%)
 Frame = +3

Query: 372 VCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFA 551
           VC   + R++R    +F   ++    D+  +D +      +  +V+P L ++S + +K  
Sbjct: 580 VCTGIYVRMSRFPSRRFQQRFVNPNIDILHADWSPFQ---KTTWVQPLLMELSPWRSKLK 636

Query: 552 KLQKKAAEFNFRNQLKVVKKKEF 620
           +++KK ++ +  N   VV   +F
Sbjct: 637 EIEKKQSQSSLGNFTDVVFVADF 659


>SB_10658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 525 VSKYENKFAKLQKKAAEFNFR-NQLK 599
           V KYEN+   LQ+K  EF+F+ N++K
Sbjct: 13  VEKYENEVTVLQEKIKEFDFKTNEIK 38


>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
          Length = 1127

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 351 NEDTIKRV-CKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKV 527
           NE  I R  CKD    I+R       LE     ++  I  L + +N+L          K+
Sbjct: 366 NELVISRKKCKDQGAEISRQSSHIGKLEATKLSQETNIRSLKANINELN--------SKL 417

Query: 528 SKYENKFAKLQKK 566
           SKYE  + +L+K+
Sbjct: 418 SKYEGDYEELEKQ 430


>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 381 DYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLK--KVSKYENKFAK 554
           D + ++  L  +  DL   V   + ++ DLN++VNDL  K  K   +  KV+    K   
Sbjct: 348 DLNTKVHDLNTKLHDLNTKVHDLNAKVHDLNTKVNDLNTKNTKVNDQNTKVNDLNTKVHD 407

Query: 555 LQKKAAEFN 581
           L  K  + N
Sbjct: 408 LNAKVHDLN 416



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 381 DYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQ 560
           D + ++  L  +  DL   V   + ++ DLN++VNDL  K V     KV     K   L 
Sbjct: 299 DLNTKLHNLNTKLHDLNTKVHDLNTKLHDLNTKVNDLNTK-VHDFNTKVHDLNTKVHDLN 357

Query: 561 KKAAEFN 581
            K  + N
Sbjct: 358 TKLHDLN 364


>SB_55022| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
          Length = 441

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 616 SFFFTTFNWLRKLNSAAFFWSLANLFSYLETFFSVGLTN 500
           + FF  FN +  L SA F WS+  L S   T FS   +N
Sbjct: 79  ALFFALFNTVLVLISAVFIWSI--LSSSRRTLFSARFSN 115


>SB_7222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +3

Query: 390 ERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKA 569
           E + R + E  DL+  V     +I  LN + ND+R  + +   +  + +E      +K+ 
Sbjct: 231 EFVKRHKQEILDLQTTVDTLQEQIKHLNDEKNDIRRSYKREMDEMGAGFEG-----EKRR 285

Query: 570 AEFNFRNQL 596
            E+ FR ++
Sbjct: 286 LEYRFRREI 294


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +3

Query: 345 DANEDTIKRVCKDYHERIARLEDE 416
           + +E+ +++V +DY E+IARL++E
Sbjct: 144 EPDEEQLEQVRRDYEEQIARLQEE 167


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/54 (22%), Positives = 31/54 (57%)
 Frame = +3

Query: 348  ANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVK 509
            A+++ I+   +    ++++++DE  +L+    R+  EI DL +++N+L     +
Sbjct: 1352 ASKEYIEGQLESLKAQMSKIKDENENLKESDARRQQEILDLENRINELENMLAR 1405


>SB_23194| Best HMM Match : IF_tail (HMM E-Value=1.26117e-44)
          Length = 788

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 354 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSK 533
           ++T+ RV  D   R   L++E+    +  +  D E+SD+ SQ+  +  K V        K
Sbjct: 374 QETLTRV--DLENRCQSLQEEQ---NFKKQMYDKELSDIRSQLKTVETKRVVVETDYKDK 428

Query: 534 YENKFA-KLQKKAAEFN 581
           YE   A KLQ+   +++
Sbjct: 429 YEGLMAEKLQELREDYD 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,995
Number of Sequences: 59808
Number of extensions: 263067
Number of successful extensions: 756
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)