Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30813
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02640.2 68417.m00359 bZIP transcription factor family protei...    34   0.13 
At4g02640.1 68417.m00358 bZIP transcription factor family protei...    34   0.13 
At5g57830.1 68418.m07232 expressed protein contains Pfam profile...    31   1.2  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    29   2.7  
At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibit...    29   2.7  
At4g01780.1 68417.m00233 XH/XS domain-containing protein contain...    29   2.7  
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar...    29   3.6  
At4g15870.1 68417.m02412 terpene synthase/cyclase family protein       29   4.7  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    28   6.2  
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea...    28   6.2  
At2g34730.1 68415.m04265 myosin heavy chain-related low similari...    28   8.3  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    28   8.3  
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    28   8.3  

>At4g02640.2 68417.m00359 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 417

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 21/72 (29%), Positives = 39/72 (54%)
 Frame = +3

Query: 333 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKP 512
           +++D+ NE T     +D  ++  R+   +       +RK  + SDL +QVNDL+G+    
Sbjct: 205 EDLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEH-SS 262

Query: 513 TLKKVSKYENKF 548
            LK++S   +K+
Sbjct: 263 LLKQLSNMNHKY 274


>At4g02640.1 68417.m00358 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 411

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 21/72 (29%), Positives = 39/72 (54%)
 Frame = +3

Query: 333 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKP 512
           +++D+ NE T     +D  ++  R+   +       +RK  + SDL +QVNDL+G+    
Sbjct: 199 EDLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEH-SS 256

Query: 513 TLKKVSKYENKF 548
            LK++S   +K+
Sbjct: 257 LLKQLSNMNHKY 268


>At5g57830.1 68418.m07232 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 387

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +3

Query: 390 ERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKA 569
           E++   E      E ++ +K+MEI+ L  QV   R K +       +  ENKF +    +
Sbjct: 78  EKMCHAETSLVLFEDLIYQKEMEIASLEFQVQAYRCKLLSLGCSDPAVIENKFPETLIFS 137

Query: 570 AEFNFRNQLKVVKK 611
            E +  NQ + +K+
Sbjct: 138 GENSRGNQKRKMKR 151


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/39 (28%), Positives = 27/39 (69%)
 Frame = +3

Query: 390 ERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFV 506
           +++A L+ ++ +LE  +++K  EIS+  SQ+ +L+ + +
Sbjct: 879 QQVASLDSQRAELEIQLEKKSEEISEYLSQITNLKEEII 917


>At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibitor
           family protein low similarity to SP|P83326
           Pectinesterase inhibitor (Pectin methylesterase
           inhibitor) (PMEI) {Actinidia chinensis}, pistil-specific
           gene sts15 [Solanum tuberosum] GI:1616628; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 145

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 327 KPKNIDDANEDTIKRVCKDYHERIARLED 413
           K KN++ A EDT+    K+Y + +A+L+D
Sbjct: 53  KQKNLEPALEDTLDDCSKNYLDAVAQLDD 81


>At4g01780.1 68417.m00233 XH/XS domain-containing protein contains
           Pfam profiles PF03469: XH domain, PF03468: XS domain
          Length = 456

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
 Frame = +3

Query: 351 NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVS 530
           +ED  +R  ++ HE+I RLE +   ++ I    ++E+  L  Q+N ++        + V 
Sbjct: 219 SEDLEQRQKEELHEKIIRLERQIDQVQAI----ELEVEQLKGQLNVMKHMASDGDAQVVK 274

Query: 531 KYENKFAKLQKKAAE---FNFRNQLKVVKKK 614
           + +  F  L +K AE    N  NQ  +++++
Sbjct: 275 EVDIIFKDLVEKEAELADLNKFNQTLILRER 305


>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
           to  M protein, serotype 5 precursor (SP:P02977)
           {Streptococcus pyogenes} and to Myosin heavy chain,
           non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
           {Drosophila melanogaster}
          Length = 537

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
 Frame = +3

Query: 333 KNIDDANEDTIKRVCKDY--HERIA---RLEDEKFDLEYIVKRKDMEISDLNSQVNDLRG 497
           K   + NE+   ++ ++   H +IA    +ED+   LEY VK ++  I  L+ ++ D   
Sbjct: 228 KKRKEFNEEMKSKITENQKLHTKIAVIDEIEDKSKKLEYQVKEQEDIIQRLSMEIKD--- 284

Query: 498 KFVKPTLKKVSKYENKFAKLQKKAAEFNFRNQL 596
              K  LK+     +KF++ QK    ++F ++L
Sbjct: 285 --QKKLLKEQKDAIDKFSEDQKLMKRWSFGSKL 315


>At4g15870.1 68417.m02412 terpene synthase/cyclase family protein
          Length = 598

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 625 KVNSFFFTTFNWLRKLNSAAFFWSLANLFSYLETFFSVGLTNLPLRSLTWEFRSEISI 452
           K+N F F   NW+++L +   +W   +L S L  +F   L    L ++   F  + S+
Sbjct: 290 KIN-FKFLQLNWIQELKTLTKWWKQQDLASKLPPYFRDRLIECYLFAIMIYFEPQFSL 346


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 280 NVKLLKGGASSRRGAVNLRTLTTPTKILLRGFAKTTMNASLVLKMKNSIWNTSL 441
           +++ L+  +S R G+    +  TPT+ +     K T+NA+ +L+      N++L
Sbjct: 40  SLRKLERSSSGRTGSDEKTSYATPTETVSSSSQKHTLNAASILRRHEQNLNSNL 93


>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           related to LACK protective antigen (GI:13625467)
           [Leishmania donovani]
          Length = 804

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 337 TLTTPTKILLRGFAKTTMNASLVLKMKNSIWNTSLKGKIW 456
           TLT  TK+   G ++  + AS + + + S+WNTS     W
Sbjct: 577 TLTPITKLCFAGKSEFLVAASHIPRPELSVWNTSKLSLSW 616


>At2g34730.1 68415.m04265 myosin heavy chain-related low similarity
           to  SP|P14105 Myosin heavy chain, nonmuscle (Cellular
           myosin heavy chain) {Gallus gallus}
          Length = 825

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 438 VKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYENKFAKLQKKAAE 575
           +K    ++SDL+ Q+N+++GK    T K+  + E K   L+K  AE
Sbjct: 729 LKNMQSQLSDLSHQINEVKGK--ASTYKQ--RLEKKCCDLKKAEAE 770


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 396 IARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 515
           ++ L   K  L  ++++KD EIS+ NS +     K VK T
Sbjct: 117 MSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLT 156


>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 357 DTIKRVCKDYHERIARLEDEKFDLEYIV 440
           +T  ++C+ Y E  A  +  KFDL Y+V
Sbjct: 674 ETGPKICQKYIEHPALFKGNKFDLRYVV 701


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,973,477
Number of Sequences: 28952
Number of extensions: 187443
Number of successful extensions: 607
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)