Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30811
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   4.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   5.4  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   7.1  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    24   9.4  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 376  YKIISMLVNLPNIRCNACR 320
            Y ++S+   LPN RC  CR
Sbjct: 1562 YSVLSVERTLPNKRCGTCR 1580


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 160 ICRGSYMFTLFIDNNLNLHFLH 225
           IC G    TLF ++ LNL  LH
Sbjct: 398 ICTGKLENTLFSNSELNLFLLH 419


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 181 TCSYLCKLFDP*DGHSFLKRVSNEEC 104
           T + +C L D  D +S L  V N EC
Sbjct: 45  TANSICTLNDSEDDNSSLNSVDNNEC 70


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 136 SDHPRDRTICRGSYMFTLFIDNNLNLHFLHTSIEDLK 246
           S  P       GSY+ T   DN+L L  L+++  +L+
Sbjct: 305 SQQPASAIFMYGSYILTSHPDNSLILQRLYSTNNELR 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,987
Number of Sequences: 5004
Number of extensions: 37187
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)