Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30811
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0206 + 11655132-11655232,11655433-11655823                       29   1.3  
11_01_0554 + 4381890-4382194,4382286-4382387,4382486-4383920           27   5.3  
03_01_0018 - 157657-158487                                             27   9.2  

>11_03_0206 + 11655132-11655232,11655433-11655823
          Length = 163

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 367 ISMLVNLPNIRCNACRLYSDGHFNPPLP 284
           I++ + LP+ R +ACR   DG  NPP P
Sbjct: 53  ITLCLGLPSSRAHACRAVPDGQ-NPPNP 79


>11_01_0554 + 4381890-4382194,4382286-4382387,4382486-4383920
          Length = 613

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +1

Query: 145 PRDRTICRGSYMFTLFIDNNLNLHFLHTSIEDLKKLTAT*SCLKRSVEEAD*SAH 309
           P+ R +CR S + ++ +D N + H L  +++   K+ A      + +E AD ++H
Sbjct: 443 PKLRFVCRRSLILSINVDKN-SEHDLQLAVDSAAKILAGDGENHKQLEIADYTSH 496


>03_01_0018 - 157657-158487
          Length = 276

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = +3

Query: 237 GFKKINSYIILFEKKCG-----RGGLKCPSEYR 320
           GFKK+N Y  +    CG     +GG  C S YR
Sbjct: 72  GFKKVNQYPFMGMTSCGNQPLYKGGKGCGSCYR 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,606,627
Number of Sequences: 37544
Number of extensions: 214656
Number of successful extensions: 317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)