Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30810
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical ...    29   2.7  
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       28   6.3  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    28   6.3  
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :...    28   6.3  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    28   6.3  

>AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical
           protein M03F8.1 protein.
          Length = 344

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 266 GFRLSLQITTIPIS*AYNILIIYTTFSLINKNFDVTSLGIRRRYICTNILVHSS 427
           GFR  L    +P+    N  I+  T  + NK F  TSL I   Y C  + +H S
Sbjct: 154 GFRYGLLFVFLPM--VLNSFILAKTLVIENKTF--TSLMIGTLYFCNEVAMHIS 203


>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = +2

Query: 128 NIESDAQKLRAESVTL---CFSQKMHKFSNNANSLSITRPT*GDPVNLLGFRLSLQITTI 298
           NI +   K R ++ TL   CF   +  F  +++S     P     + L   RLS  +   
Sbjct: 88  NISNLKIKFRQKTYTLNDVCFKPHITIFQQSSSSDQNEYPHYIQRLLLEMQRLSPCLIVT 147

Query: 299 PIS*AYNILIIYTTFSLINKNFDVTSLGIRRRYI 400
           P++  Y+I  I+   S  NKN D  +  +R  YI
Sbjct: 148 PLNCFYDIYRIHGEISNWNKNTDFLNRRLRNSYI 181


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
           protein.
          Length = 1475

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = +2

Query: 128 NIESDAQKLRAESVTL---CFSQKMHKFSNNANSLSITRPT*GDPVNLLGFRLSLQITTI 298
           NI +   K R ++ TL   CF   +  F  +++S     P     + L   RLS  +   
Sbjct: 88  NISNLKIKFRQKTYTLNDVCFKPHITIFQQSSSSDQNEYPHYIQRLLLEMQRLSPCLIVT 147

Query: 299 PIS*AYNILIIYTTFSLINKNFDVTSLGIRRRYI 400
           P++  Y+I  I+   S  NKN D  +  +R  YI
Sbjct: 148 PLNCFYDIYRIHGEISNWNKNTDFLNRRLRNSYI 181


>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform b
           protein.
          Length = 1147

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = +2

Query: 128 NIESDAQKLRAESVTL---CFSQKMHKFSNNANSLSITRPT*GDPVNLLGFRLSLQITTI 298
           NI +   K R ++ TL   CF   +  F  +++S     P     + L   RLS  +   
Sbjct: 88  NISNLKIKFRQKTYTLNDVCFKPHITIFQQSSSSDQNEYPHYIQRLLLEMQRLSPCLIVT 147

Query: 299 PIS*AYNILIIYTTFSLINKNFDVTSLGIRRRYI 400
           P++  Y+I  I+   S  NKN D  +  +R  YI
Sbjct: 148 PLNCFYDIYRIHGEISNWNKNTDFLNRRLRNSYI 181


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform a
           protein.
          Length = 1475

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = +2

Query: 128 NIESDAQKLRAESVTL---CFSQKMHKFSNNANSLSITRPT*GDPVNLLGFRLSLQITTI 298
           NI +   K R ++ TL   CF   +  F  +++S     P     + L   RLS  +   
Sbjct: 88  NISNLKIKFRQKTYTLNDVCFKPHITIFQQSSSSDQNEYPHYIQRLLLEMQRLSPCLIVT 147

Query: 299 PIS*AYNILIIYTTFSLINKNFDVTSLGIRRRYI 400
           P++  Y+I  I+   S  NKN D  +  +R  YI
Sbjct: 148 PLNCFYDIYRIHGEISNWNKNTDFLNRRLRNSYI 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,841,907
Number of Sequences: 27780
Number of extensions: 283811
Number of successful extensions: 486
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)