Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30808
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 33 0.031
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.68
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.89
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.89
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar... 26 4.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.8
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.3
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 8.3
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 8.3
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.3
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.3
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.5 bits (73), Expect = 0.031
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 19 TSCTARRTTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTVAKQSTLWATTGRRTPI 192
TS T T+ SST + +S TSS V +S P T + + T + TPI
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPI 2412
Query: 193 YSKKTSSNSTSV 228
S + STS+
Sbjct: 2413 TSSTVVNTSTSI 2424
Score = 32.3 bits (70), Expect = 0.073
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 19 TSCTARRTTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTVAKQSTLWATTGRRTPI 192
TS TA T+ SST + + TSS V TS P T + + T TPI
Sbjct: 1645 TSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 1704
Query: 193 YSKKTSSNSTSV 228
S ++ST +
Sbjct: 1705 TSSSVLNSSTPI 1716
Score = 32.3 bits (70), Expect = 0.073
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 19 TSCTARRTTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTVAKQSTLWATTGRRTPI 192
TS TA T+ SS+ + + TSS V TS P T + + T TPI
Sbjct: 2305 TSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPI 2364
Query: 193 YSKKTSSNSTSV 228
S + STS+
Sbjct: 2365 TSSTALNTSTSI 2376
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +1
Query: 19 TSCTARRTTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTVAKQSTLWATTGRRTPI 192
TS TA T+ SST + + TSS V +S P T + T + T I
Sbjct: 3037 TSSTALNTSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAI 3096
Query: 193 YSKKTSSNSTSV 228
S ++ST +
Sbjct: 3097 TSSSIVNSSTPI 3108
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.68
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +1
Query: 16 TTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 195
TT+CT + ++ ++ ++S+ VTS P T CT + S L+ +T +P
Sbjct: 552 TTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVT-TTNCTTS-TSVLYTSTPITSP-- 607
Query: 196 SKKTSSNSTSV 228
TSS+ST V
Sbjct: 608 -NSTSSSSTQV 617
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 16 TTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 195
TT+CT + ++ ++ ++S+ VTS P T CT + +T TP+
Sbjct: 493 TTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVT-TTNCTTSTSVLYTSTPVTSTPL- 550
Query: 196 SKKTSSNSTSV 228
+ + STSV
Sbjct: 551 ATTNCTTSTSV 561
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.89
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 58 SSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 225
SS+ SS++SS +SRPS+ T ST +T S TSS S
Sbjct: 215 SSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPS 270
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 82 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 225
SS TSS +S PS+ T + S+ +++ + S +SS+S+S
Sbjct: 133 SSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSS 180
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 28.7 bits (61), Expect = 0.89
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 82 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNS 219
S ++++ +TS + +I T + +++ +T TPI S TSSNS
Sbjct: 154 SDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASPTTSSNS 199
>SPAC3H5.04 |aar2||U5 snRNP-associated protein
Aar2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 579 HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNW 701
H+ +ID S T ++ K L YDEN +PF +W
Sbjct: 58 HEDMKYSIDFDSKSETASLQK--LDVLYDENFYPFESTKDW 96
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 8/43 (18%)
Frame = +3
Query: 552 YKVRQPRLNHKP--FTVTIDIKSDVATNAV---VKM---FLGP 656
Y+V++PRLN +P +T ++++ +A+N V VK+ FLGP
Sbjct: 554 YEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGP 596
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 85 SNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSV 228
S +S K S PST K + ++ + +P+Y+ K+ +ST V
Sbjct: 651 SLSSPKRQSVPSTPKASLSPRVHKSMTYSPSEASPLYANKSPKSSTMV 698
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 462 KMVTFFDHF-DFDAFNTVYFSKEELKSSPHGYKVRQPRLNHKPFTVTIDIKSDVATNAVV 638
++V F F D +N+ + S + +K + L++K F + +++ TN+ V
Sbjct: 35 ELVVFATAFGDVSIYNSSFKSLQSIKVEDESSIQQILWLDNKTFLLFSNVEGGTGTNSTV 94
Query: 639 KMFLGPKYDENGFP 680
++ + DEN P
Sbjct: 95 IIYAFSQADENEPP 108
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 337 QPSTSSIKGLFNTSSNLNSTRYHTH--KKLFTSLV*KFPTSKST 462
QPS + + G + S N NS+R T+ ++ F+S P+S T
Sbjct: 41 QPSLNKLGGFSSASLNFNSSRSSTNDDQQTFSSQSDNLPSSPIT 84
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 8.3
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +1
Query: 16 TTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 195
TTS ++ T +SS+ SS++SSK +S S+ K + ++T TT ++ Y
Sbjct: 132 TTSSSSSATPSTTSSSSSSSSSSSSSSSKSSS--SSSKSSSRSSSRTTSHRTTSHKSSSY 189
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 16 TTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATT 174
++S ++ + +SS+ SS++SSK ++ PS+ K + S + +TT
Sbjct: 179 SSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTT 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,805
Number of Sequences: 5004
Number of extensions: 50278
Number of successful extensions: 214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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