Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30808
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0306 + 16176873-16177124,16178155-16179152,16179204-161793...    29   2.8  
07_01_0686 - 5184061-5184267,5184655-5184762,5185405-5185578,518...    29   2.8  
02_03_0134 - 15596379-15597689                                         29   2.8  
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315     29   3.8  
03_02_0243 - 6744164-6744415,6744518-6745135                           29   5.0  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    29   5.0  
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213...    28   6.6  
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716...    28   8.7  

>11_04_0306 +
           16176873-16177124,16178155-16179152,16179204-16179339,
           16179448-16179597,16179711-16179891,16181139-16181298,
           16182156-16182378
          Length = 699

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 79  HSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 195
           H   TS+ +   PSTK L+C+  +Q+ L  +  R  P+Y
Sbjct: 583 HLDTTSTSINLHPSTKLLLCS-QEQAGLKFSLSRACPLY 620


>07_01_0686 -
           5184061-5184267,5184655-5184762,5185405-5185578,
           5185680-5185808,5185891-5186178,5186341-5186570,
           5186619-5187516
          Length = 677

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 602 NCHSERLVV-KTWLTDLVTVRRALEFFFTEVDGVEGIEVEMVKECDHFVD 456
           N  +ER+ V KTW++ +      +  FF  + G + + VE+ KE + F D
Sbjct: 442 NHFAERMGVRKTWMSAVRNSPNVVARFFVALHGRKEVNVELKKEAEFFGD 491


>02_03_0134 - 15596379-15597689
          Length = 436

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 28  TARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTG 177
           TAR  + K  + T  +  S+   S ++SRP   K+  + AKQ T  AT G
Sbjct: 121 TARNRSSKDMNRT-AKSSSAMQKSNLSSRPGVDKMAASSAKQRTQKATPG 169


>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
          Length = 678

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 82  SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSV 228
           +S ++S  ++RP+T    CT        A T   +P  +K+TSS S+SV
Sbjct: 635 ASRSASPTSARPATSSWTCTS-------AATASASPATAKRTSSTSSSV 676


>03_02_0243 - 6744164-6744415,6744518-6745135
          Length = 289

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 638 DDGVSGNIRFNINCHSERLVV 576
           D  VSG+ RF++ C  ERLVV
Sbjct: 87  DVRVSGSARFDVQCRGERLVV 107


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -1

Query: 518 EVDGVEGIEVEMVKECDHFVDFDVGNFQTNEVKSFLCVWYLVLFKF 381
           E+  ++  EV ++K C  F  F +   Q   +  +LC+ ++VL  +
Sbjct: 409 ELSRLDNPEVSLIKACLVFTTFSMALVQKCRLTQYLCLVFIVLVDY 454


>09_03_0177 -
           13120816-13120941,13121032-13121137,13121231-13121305,
           13121385-13121461,13122462-13122549,13122638-13122699,
           13122807-13122863,13122960-13123049,13123186-13123251,
           13123530-13123619,13123711-13123804,13123915-13124213
          Length = 409

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 339 AFYQLYKRIVQYIIEFKQYQVPYTQEALHFVGLKI 443
           A+    K    ++ EF+ ++ P+  EA+H V L+I
Sbjct: 91  AYSSFEKAANAFLQEFRNWETPWAMEAMHTVALEI 125


>01_03_0216 +
           13870364-13870472,13871406-13871477,13871603-13871668,
           13871767-13871823,13871917-13871984,13872068-13872149,
           13872445-13872500,13872645-13872947,13873042-13873128,
           13873199-13873373,13873481-13873602,13873689-13873852,
           13873925-13874179,13874312-13874433,13874542-13874663,
           13875111-13875259,13875346-13875484,13875715-13875750
          Length = 727

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 402 PYTQEALHFVGLKISDVKVDKMVTFF 479
           PYTQ AL FV L +   K+D+  T F
Sbjct: 506 PYTQSALLFVDLGMDVYKIDRACTKF 531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,407,781
Number of Sequences: 37544
Number of extensions: 313494
Number of successful extensions: 850
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)