Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30808
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               31   0.95 
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)                    31   0.95 
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            29   3.8  
SB_25448| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_14410| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_57651| Best HMM Match : Homeobox (HMM E-Value=3e-29)                28   6.7  
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  28   8.9  
SB_23488| Best HMM Match : PSI_8 (HMM E-Value=5)                       28   8.9  
SB_6363| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)          28   8.9  
SB_29619| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 28/76 (36%), Positives = 39/76 (51%)
 Frame = +1

Query: 1   AQEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGR 180
           +Q   TT  T  +TTK  A++T     +S T +  TS  ST K   T++  ST  ATT  
Sbjct: 442 SQSTSTTEATKSQTTK--ATTTL---STSTTKATTTSSTSTTKATTTLS-TSTTKATT-- 493

Query: 181 RTPIYSKKTSSNSTSV 228
            TP  S   ++ ST+V
Sbjct: 494 -TPSTSTTKATTSTAV 508


>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
          Length = 2057

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 411 QEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPRLNHK 584
           QE   F+ +K+SD  ++        FDFD+ + V  +KE  K S      ++PR   K
Sbjct: 640 QENEEFLDIKVSDESLETPQFQVTRFDFDSNSEVEKNKESSKRSLREKAAKRPRPRRK 697


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +1

Query: 4    QEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRR 183
            +E+  +    RR  K+  S+  M R     S ++ +R   +KL   VA   T   T GR+
Sbjct: 1127 KESTRSRAENRRRAKEEMSA--MERELEEASEQIKAREQ-EKLNKHVASVRTKIVTPGRK 1183

Query: 184  TPIYSKKT 207
            TP+  K+T
Sbjct: 1184 TPVTPKRT 1191


>SB_25448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 34  RRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYS 198
           RR +K  A S+ M    S T++   S P   +     A +  LW T  RRT + S
Sbjct: 232 RRRSKALAPSSRMHAAHSMTAAGTASAPGPGEKSDHTALKFALWMTFERRTTVLS 286


>SB_14410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 34  RRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYS 198
           RR +K  A S+ M    S T++   S P   +     A +  LW T  RRT + S
Sbjct: 132 RRRSKALAPSSRMHAAHSMTAAGTASAPGPGEKSDHTALKFALWMTFERRTTVLS 186


>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +1

Query: 16  TTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 195
           TTS T   +T   ++ST     ++NTS+  TS P T     T A  ++  + +  R P  
Sbjct: 11  TTSITTSTSTP--STSTPRAGSTTNTSAPSTSTPRTGSTTTTSAPSTSTTSNSTTRAPST 68

Query: 196 SKKTSSNSTS 225
           S   + ++T+
Sbjct: 69  STPRAGSTTT 78


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 70   MRRHSSNTSSKVTSRPSTKK-LICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 225
            +R+ S N S K          ++CT+ K       T  RT   SK ++ NSTS
Sbjct: 2196 LRKCSENVSRKAQEHCRVAPYMVCTLTKSCRYQTATRTRTVRLSKASNENSTS 2248


>SB_57651| Best HMM Match : Homeobox (HMM E-Value=3e-29)
          Length = 294

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 180 TNADLFEEDFLQFYQRSYEVNARRVLGAAPKPFNQYTFIPSALDFYQTSARDPAFYQ 350
           T AD+F +D   FYQ+S   +   ++  +PK         SA   Y  S + P+ YQ
Sbjct: 54  TRADMFYQDPFLFYQQSPHYSPHNIVPPSPKYSPHLMGDCSAQSAYFVS-KQPSHYQ 109


>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +1

Query: 7   EAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRT 186
           E  TT  T   TT    ++T     +   ++  T  P+T   I T  ++ T   TT   T
Sbjct: 27  ETTTTKTTEEPTTITETTTTTEEPTTITETTTTTEEPTTITEITTTTEEPTTTTTTAAET 86

Query: 187 P 189
           P
Sbjct: 87  P 87


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/70 (25%), Positives = 37/70 (52%)
 Frame = +1

Query: 16  TTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 195
           TTS  +  ++    ++T     +  TSS V   P+T  ++ +  + S++  T+   TP+ 
Sbjct: 443 TTSTPSLESSMTSNNTTLTLAEAVATSSPVL--PTTTSVLTSSMEPSSMATTSTTSTPLE 500

Query: 196 SKKTSSNSTS 225
           S  T++++TS
Sbjct: 501 SSMTTNSTTS 510


>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 246 RRVLGAAPKPFNQ--YTFIPSALDFYQTSARDPAFYQLYKRIVQYIIEFKQYQVPY 407
           R VL A  KP+    Y F  +ALD ++T  +D   Y  +   + +  EF Q  + Y
Sbjct: 182 RYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEY 237


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 22   SCTARRTTKKFASSTFMRRHSSNTSSKVTSRPST 123
            S  +R    KF+S+T+ R+  S+  S VTS+  T
Sbjct: 2937 SADSRNKIDKFSSTTYSRKKESSGKSDVTSKTVT 2970


>SB_23488| Best HMM Match : PSI_8 (HMM E-Value=5)
          Length = 192

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +3

Query: 171 YWQTNADLFEEDFLQFYQRSYEVNARRVLGA--APKPFNQYTFIPSALDFYQTSA 329
           Y  T   L  ++ LQFY + Y         +   PK + QYTF  + +  Y +SA
Sbjct: 93  YIPTCVQLRHKNLLQFYVKKYVACLMFATSSDFCPKEYEQYTFADTWIASYLSSA 147


>SB_6363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +3

Query: 276 FNQYTFIPSALDFYQTSARDPAFYQLYKR-----IVQYIIEFKQYQVPYTQEALHFVGLK 440
           + QYT   + L + Q +     +   Y R       QY I + QY   YT+ ALH +   
Sbjct: 60  YRQYTSRNTLLAYTQYAIHYTQYATRYTRNALLAYTQYAINYTQYATCYTRNALHAIRFT 119

Query: 441 ISDVK 455
           +  ++
Sbjct: 120 LHAIR 124


>SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)
          Length = 729

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 156 NFVGNYWQTNADLFEEDFLQFYQRSYEVNA-RRVLGAAPKPFNQYT 290
           N  G  WQ+ ADL    +  F  R  ++N  +++L  A K   +Y+
Sbjct: 249 NGTGGIWQSVADLLPRSWFHFENRVVQLNIDKKILTVASKDGAKYS 294


>SB_29619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +3

Query: 93  LQQGHFKAFDKEIDLHSSKAVNFVGNYWQTNADL--FEEDFLQFYQ-RSYEVNARRVLGA 263
           LQQ  F  F   +++   KA+ F G  W   +++       + FYQ  + E+  R+    
Sbjct: 526 LQQTKFSRFKNSMNVKFGKALKFTGKLWNVGSEVANIAGAAMMFYQIINTEMVCRKRAEE 585

Query: 264 APKPFNQYT 290
           A K  ++ T
Sbjct: 586 AKKALDEIT 594


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,008,460
Number of Sequences: 59808
Number of extensions: 350852
Number of successful extensions: 1017
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)