Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30807
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   3.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.7  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   6.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.3  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
 Frame = +2

Query: 539 GHVHWPVGGGSLRRVVLARGHRP------ECTLDKF-PQRRP 643
           GH  WP   GSL R    +   P       C L K  P R+P
Sbjct: 77  GHPQWPFAWGSLXRSSSPQTSAPTGPPIVRCALRKHKPNRKP 118


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 574 KGSSAHWPVDVPTFDDVARLSSDLAP 497
           KG+  ++P   PT+D+  R    L P
Sbjct: 368 KGTQTNYPSYEPTYDNSRREGKQLNP 393


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -1

Query: 120 RLTRARLHSTTTSSVPTILPK-ERVMTFG 37
           +L    LH T   S P +LPK + +  FG
Sbjct: 246 KLNVLHLHLTDAVSFPIVLPKVQELARFG 274


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 687 SKSIHLLLVRGWNALGR 637
           S +I+ +L R W+ALGR
Sbjct: 506 SAAINQILGRRWHALGR 522


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 687 SKSIHLLLVRGWNALGR 637
           S +I+ +L R W+ALGR
Sbjct: 398 SAAINQILGRRWHALGR 414


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,939
Number of Sequences: 336
Number of extensions: 3306
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)