Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30807
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.079
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 30 0.42
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.56
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 28 1.3
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 28 1.7
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 3.9
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 27 3.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.9
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 26 5.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 6.9
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha... 26 6.9
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 9.1
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 32.3 bits (70), Expect = 0.079
Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 9/198 (4%)
Frame = +3
Query: 114 SAVVLRKRRTIESTQPSSTRAGNGGSKQFNYNKLINDRALLSGMQRCTRDAYSKSLNQVK 293
S++ ++ S SS + S Q + I+ + S Q T S+ +++V
Sbjct: 450 SSISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQS-TLSTSSEVVSEVS 508
Query: 294 EDLLIDLDLPPSTKPSTPKRA-TNQNNVSIIDQPIDVPEIGDG--------IEWGQQSTE 446
LL PST STP + + S++ +P I G S+
Sbjct: 509 STLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSS 568
Query: 447 SLPTFSVYSGNAQSSMHGAKSLDSLATSSNVGTSTGQWAEDPFDASSWPADTGPNVHSTS 626
TFS S + SS + S SL+ SS+ +ST A ++S P+ ++ S+S
Sbjct: 569 IPSTFSSVS-SILSSSTSSPSSTSLSISSSSTSSTFSSA-----STSSPSSISSSISSSS 622
Query: 627 SLNAVPMRSNHELEVNES 680
++ + P S L ++ S
Sbjct: 623 TILSSPTPSTSSLMISSS 640
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 29.9 bits (64), Expect = 0.42
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 591 PADTGPNVHSTSSLNAVPMRSNHELEVNESISMRSRQNESHVYSIN-YVTTRDTD 752
P T PN S S+ + P+ N E V+ + +NE Y + YV D+D
Sbjct: 124 PVITWPNTDSPSATTSSPISRNPEYSVSPPNGSKFVKNEDEAYDSDLYVEEEDSD 178
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.5 bits (63), Expect = 0.56
Identities = 24/97 (24%), Positives = 44/97 (45%)
Frame = +3
Query: 438 STESLPTFSVYSGNAQSSMHGAKSLDSLATSSNVGTSTGQWAEDPFDASSWPADTGPNVH 617
S+ S + S S + SSM + S S TSS+ S+ + SS + + +
Sbjct: 308 SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSS 367
Query: 618 STSSLNAVPMRSNHELEVNESISMRSRQNESHVYSIN 728
+S++++ S+ L + S S R + SH S++
Sbjct: 368 FSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLS 404
Score = 29.1 bits (62), Expect = 0.74
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +3
Query: 456 TFSVYSGNAQSSMHGAKSLDSLATSSNVGTSTGQ---WAEDPFDASSWPADTGPNVHSTS 626
TFS S + SS S S SS TST + +SS P+ + + ++S
Sbjct: 174 TFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSS 233
Query: 627 SL--NAVPMRSNHELEVNESISMRS 695
SL +++P S+ + S+S S
Sbjct: 234 SLSTSSIPSTSSSSSSTSSSLSSSS 258
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +3
Query: 438 STESLPTFSVYSGNAQSSMHGAKSL-DSLATSSNVGTSTGQWAED--PFDASSWPADTGP 608
S ES P S + +S+ + L DS+ + +N + + +D P + SWP+
Sbjct: 31 SRESTPRGSPWRAGMRSASLMTEPLEDSMYSDNNYLDNGVSFTKDENPLYSPSWPSLADA 90
Query: 609 NVHSTSSLNAV 641
NV+S S NA+
Sbjct: 91 NVNSMKSNNAI 101
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Frame = -3
Query: 586 DDASK-GSSAHWPVDV----PTFDDVARLSSD 506
DDA K G+ HWP++V PT +D LS+D
Sbjct: 344 DDAGKIGAYTHWPIEVRVCAPTPEDECWLSTD 375
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 495 HGAKSLDSLATSSNVGTSTGQWAEDPFDASSWPADTGPNVHSTSSLNAV 641
HG S D+ T S S WA DP++A++ P N++S+ +++
Sbjct: 397 HGRDSSDTSCTESPPEPSHFAWAFDPYNATASPY-YNQNINSSIDYSSI 444
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 306 IDLDLPPSTKPSTPKRA 356
+D++ PPST PS+P+R+
Sbjct: 1 MDINPPPSTAPSSPRRS 17
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Frame = +3
Query: 150 STQPSSTRAGNGGSKQFNYNKLINDRALLSGMQRC------TRDAYSKSLNQ-VKEDLLI 308
S PS R+ + +K+F+Y+K +N+ + + ++ A++K +Q + +D LI
Sbjct: 39 SINPSPPRSNDNSNKEFSYSKDVNNNGAVEELSLTQLFEVPSQAAFAKQSSQDISDDELI 98
Query: 309 DLD-LPPSTKPSTPKR 353
D + P +PK+
Sbjct: 99 QHDSRKVISSPYSPKQ 114
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 535 TWARPLASGRRIPSTRRPGPRTPARMYTRQVPSTP 639
T+ P ASG R+P ++P P YT P +P
Sbjct: 934 TYHPPTASGTRVPPVQQPSHPNP---YTPVAPQSP 965
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -2
Query: 293 FNLVQTFGIGVSRAPLHAGQQSAIVDKFVVVELFAAAVTGARA 165
F LV +G+G+ APL G + F+++ +A V GA A
Sbjct: 176 FLLVHYYGLGLKGAPLATGLSYWL--SFILLTQYAKYVKGAEA 216
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 579 ASSWPADTGPNVHSTSSLNAVPMRSNHELEVNESISMRSRQNESHVY 719
A + ++ G +V ++ + +P+ SNH+ E ++ + S + HVY
Sbjct: 1736 AENGVSEAGVDVMTSIVSSTIPIVSNHQTEGSQMFNEISSVSSIHVY 1782
>SPAC328.07c |||heavy metal ion homeostasis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 6.9
Identities = 20/96 (20%), Positives = 41/96 (42%)
Frame = +3
Query: 387 QPIDVPEIGDGIEWGQQSTESLPTFSVYSGNAQSSMHGAKSLDSLATSSNVGTSTGQWAE 566
Q + P+ G+ + S + +P+ S N H +L+ V ++T + E
Sbjct: 63 QHLSTPDPGNDSGHVRSSNDRIPSTS---SNHADGHHVDSVFSNLSAKPTVESNTEELEE 119
Query: 567 DPFDASSWPADTGPNVHSTSSLNAVPMRSNHELEVN 674
+P ADT P T+ + +P ++E+ ++
Sbjct: 120 EPPSYEQAAADTAPPYWDTTMV--IPDYGSNEIYID 153
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 579 ASSWPADTGPNVHSTSS--LNAVPMRSNHELEVNESISMRSRQNESHVYSINYVTTR 743
A+ + D + H +S ++ VPMR++ + + +R N + V + +YV R
Sbjct: 241 ANEYSQDVPASTHRAASELVHGVPMRASGINDPKHDLDAATRHNINSVAAASYVAAR 297
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,856
Number of Sequences: 5004
Number of extensions: 58847
Number of successful extensions: 224
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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