Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30807
(774 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39032| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79) 31 1.0
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) 31 1.0
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08) 31 1.4
SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_31206| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_19601| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_43977| Best HMM Match : VWA (HMM E-Value=4.9e-13) 29 4.2
SB_15758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_14526| Best HMM Match : Drf_FH1 (HMM E-Value=0.16) 29 5.5
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68) 28 7.3
SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62) 28 9.6
SB_233| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_39032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 33.1 bits (72), Expect = 0.26
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +3
Query: 330 TKPSTPKRATNQNNVSIIDQPIDVPEIGDG-----IEWGQQSTESLP-TFSVYSGNAQSS 491
+KPS PK ++++ D+ +D PE+ D ++WG + SL +VY NA+SS
Sbjct: 13 SKPSGPKARSSRHIPQAPDRILDAPELLDDYYLNLLDWGNNNLLSLALAGAVYIWNAESS 72
Query: 492 MHGAKSLDSLATSSNVGTSTGQWAEDPFDASSWP 593
K L + V S+ W ++ +WP
Sbjct: 73 --DIKHLFQMDEGEYV--SSVAWVQEHSMTHTWP 102
>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2484
Score = 31.9 bits (69), Expect = 0.59
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Frame = +3
Query: 321 PPSTKPSTPKRATNQNNVSIIDQPIDVPEIGDGIEWGQQSTESLPTFSVYSGNAQSSMHG 500
PP + S+ T++NN S D + VPE G ++ S + T+ +Y +
Sbjct: 2153 PPVKRASSASEVTSRNNDSFEDFFLTVPEKGSKLQASNISLQITSTYPLYLRRG-AVTPA 2211
Query: 501 AKSLDSLATSSNVGTSTGQWAEDPFDASSWPADTGPNVH-STSSLNAVPMRSNHELEVNE 677
+ SL S +T+S++ + D + P + S SL+ +++ + ++ +
Sbjct: 2212 SMSLKSNSTNSSINHLLKNISNDGLNLRR------PILFLSRHSLSMQNLKTLNHIDPSL 2265
Query: 678 SISMRSRQNESHVYS 722
+ S S ++E H++S
Sbjct: 2266 ACSCTSMKSEVHIHS 2280
>SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79)
Length = 632
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/60 (36%), Positives = 25/60 (41%)
Frame = +3
Query: 219 NDRALLSGMQRCTRDAYSKSLNQVKEDLLIDLDLPPSTKPSTPKRATNQNNVSIIDQPID 398
NDR + Q T D K + KED D LP KP TPK +NV D D
Sbjct: 353 NDRIPIKAAQDSTLDTELKVNGEEKEDAEFD-SLP--VKPRTPKSGATASNVENGDSEFD 409
>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
Length = 685
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +3
Query: 330 TKPSTPKRATNQNNVSIIDQPIDVPEIGDG-----IEWGQQSTESLP-TFSVYSGNAQSS 491
+KPS PK ++++ D+ +D PE+ D ++WG + SL +VY NA+SS
Sbjct: 171 SKPSGPKARSSRHIPQAPDRILDAPELLDDYYLNLLDWGNNNLLSLALAGAVYIWNAESS 230
>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
Length = 924
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +3
Query: 471 SGNAQSSMHGAKSLDSLATSSNVGTSTGQWAEDP-FDASSWPADTGPNVHSTSSLNAVPM 647
SG + S+ S ATSS+ T Q A D FDA + +D S S +
Sbjct: 325 SGGSHSNGVNDSGYGSSATSSHGNTGLTQAAPDSWFDADDYESDPSRPTSSASDVEQRLD 384
Query: 648 RSNHELEVNESISMRSRQNESHVYS 722
S H E+++S Q + ++S
Sbjct: 385 ESGHASELDDSAERSYFQEMARLHS 409
>SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -3
Query: 700 CRDRIEIDSFTSSSWLERIGTALRELVECTFGPVSAGQDDASKG 569
CR I++D +R+GTALREL + T G +S G+ KG
Sbjct: 424 CRRVIKLDCIGHVQ--KRMGTALRELKKKTKGKLSDGKSVGGKG 465
>SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -3
Query: 700 CRDRIEIDSFTSSSWLERIGTALRELVECTFGPVSAGQDDASKG 569
CR I++D +R+GTALREL + T G +S G+ KG
Sbjct: 373 CRRVIKLDCIGHVQ--KRMGTALRELKKKTKGKLSDGKSVGGKG 414
>SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 609 NVHSTSSLNAVPMRSNHELEVNESISMRSRQNESHVYSINYVTTRDTDA-SRLHNT 773
++H+T+ N S H + S++ +R N + S+N T +T + LHNT
Sbjct: 35 SLHNTTRHNTTRHNSLHNTTRHNSLNSTTRHNTTRHNSLNSTTRHNTTRHNSLHNT 90
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 568 IPSTRRPGPRTPARMYT-RQVPSTPSQCVPT 657
IPST RP P TP R T R P TP PT
Sbjct: 1354 IPSTPRPRPPTPPRPPTPRPRPPTPRPGPPT 1384
>SB_31206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 496 TVLSHSTVSRRHRTWARPLASGRRIPSTRRPGPRTPARMYTRQVPSTP 639
T S T+++ +++W R GRR T GP+ A STP
Sbjct: 3 TPSSKLTLTKGNKSWYRAPPRGRRFTKTTTGGPKQKAAAIREPQTSTP 50
>SB_19601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 29.1 bits (62), Expect = 4.2
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Frame = +3
Query: 354 ATNQNNVSIIDQPIDVPEIGDGIEWGQQSTESLPTFSVYSGNA--------QSSM-HGAK 506
A +N +++ I VPEI + I++ S +P+ + GN Q M +G+K
Sbjct: 47 ANLRNESTLLSSKIPVPEITESIDFASGSIREVPSSTENKGNKNKILEKNDQGKMINGSK 106
Query: 507 SLDSLATSSNVGTSTGQWAEDPFDASSWPADTGPNVHSTSSLNAVPMRSNHELEVNESIS 686
+S + S++VG + Q + AS A TG + + S + N +++ES +
Sbjct: 107 VFESGSGSTDVGITGNQ--NEVISASDVRA-TGNSGFESGSGSGNVHEINDSWKIHESQT 163
Query: 687 MRSRQNES 710
+R S
Sbjct: 164 NGTRARAS 171
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 29.1 bits (62), Expect = 4.2
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 3/200 (1%)
Frame = +3
Query: 168 TRAGNGGSKQFNYNKLINDRALLSGMQRCTRDAYSKSLNQVKEDLLIDLDLPPSTKPSTP 347
T+ NG + N LI+ LL G + T ++ KSL ++ L L S +
Sbjct: 5027 TKQFNGSRCEIACNNLIDFGFLLDGSRFLTSTSFEKSLKFLQS--LFGL-FSISASEARI 5083
Query: 348 KRATNQNNVSIIDQPIDVPEIGDGIEWGQQSTESLPTFSVYS-GNAQSSMHGA--KSLDS 518
A NV+ + +P D +G+ + F GN S+ G K L
Sbjct: 5084 GGALYDRNVTTLFEP-DTYNTKEGVLGAVKQVSYPNKFQERRIGNGIESIQGMFDKHLRL 5142
Query: 519 LATSSNVGTSTGQWAEDPFDASSWPADTGPNVHSTSSLNAVPMRSNHELEVNESISMRSR 698
AT + S+G+ ++DP++ + GP T L P +N + ++ E + S
Sbjct: 5143 NATRILLIMSSGRSSDDPYNEARL-FKGGPR---TKILTIGPKETNSQGQLRE---VASS 5195
Query: 699 QNESHVYSINYVTTRDTDAS 758
E ++Y Y D D S
Sbjct: 5196 PYERYIYFREYDIVGDRDES 5215
>SB_43977| Best HMM Match : VWA (HMM E-Value=4.9e-13)
Length = 227
Score = 29.1 bits (62), Expect = 4.2
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 3/200 (1%)
Frame = +3
Query: 168 TRAGNGGSKQFNYNKLINDRALLSGMQRCTRDAYSKSLNQVKEDLLIDLDLPPSTKPSTP 347
T+ NG + N LI+ LL G + T ++ KSL ++ L L S +
Sbjct: 28 TKQFNGSRCEIACNNLIDFGFLLDGSRFLTSTSFEKSLKFLQS--LFGL-FSISASEARI 84
Query: 348 KRATNQNNVSIIDQPIDVPEIGDGIEWGQQSTESLPTFSVYS-GNAQSSMHGA--KSLDS 518
A NV+ + +P D +G+ + F GN S+ G K L
Sbjct: 85 GGALYDRNVTTLFEP-DTYNTKEGVLGAVKQVSYPNKFQERRIGNGIESIQGMFDKHLRL 143
Query: 519 LATSSNVGTSTGQWAEDPFDASSWPADTGPNVHSTSSLNAVPMRSNHELEVNESISMRSR 698
AT + S+G+ ++DP++ + GP T L P +N + ++ E + S
Sbjct: 144 NATRILLIMSSGRSSDDPYNEARL-FKGGPR---TKILTIGPKETNSQGQLRE---VASS 196
Query: 699 QNESHVYSINYVTTRDTDAS 758
E ++Y Y D D S
Sbjct: 197 PYERYIYFREYDIVGDRDES 216
>SB_15758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -3
Query: 175 ARVLEGCVDSIVLRFLSTTADSCASPFDNDEFSTDDFAEGEGDD 44
AR+L + +V+ + AD+ A+ D+DE++ DD E + DD
Sbjct: 2 ARILVMVMLMLVIMIIIDNADAAAAA-DDDEYTIDDNYEDDNDD 44
>SB_14526| Best HMM Match : Drf_FH1 (HMM E-Value=0.16)
Length = 517
Score = 28.7 bits (61), Expect = 5.5
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Frame = +3
Query: 321 PPSTK--PSTPKRATNQNNVSIIDQPI--DVPEIGDGIEWGQQSTE-SLPTFSVYSGNAQ 485
PPS++ P+ A ++ ++ P D P + + +T +PT S + A
Sbjct: 252 PPSSEDNPAAVAMADGAKTITSLETPTSEDTPAAVAMADGAKTNTSLEIPT-SEDTTAAV 310
Query: 486 SSMHGAKSLDSLATSSNVGTSTGQWAEDPFDASSWPADTGPNVHSTSS 629
+ GAK+ SL T ++ T ++ E+P + +T P ST++
Sbjct: 311 AVADGAKTNPSLETPTSEDTPAAEYVEEPNQSPPTLTNTSPKDKSTNT 358
>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2429
Score = 28.7 bits (61), Expect = 5.5
Identities = 27/98 (27%), Positives = 45/98 (45%)
Frame = +3
Query: 255 TRDAYSKSLNQVKEDLLIDLDLPPSTKPSTPKRATNQNNVSIIDQPIDVPEIGDGIEWGQ 434
T+D+ + + E+LL + T PSTPK QN +S + +GD + +
Sbjct: 915 TKDSTKSVMAEAGENLLHCIGNVLETSPSTPK--CQQNKMSAKKALAMIENVGDSL-LKR 971
Query: 435 QSTESLPTFSVYSGNAQSSMHGAKSLDSLATSSNVGTS 548
Q+TE P + + + Q + K D L+ +VG S
Sbjct: 972 QTTEDEPIL-IQTQSIQMVLDRKKPED-LSKPKSVGNS 1007
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +3
Query: 510 LDSLATSSNVGTSTGQWAEDPFDASSWPADTGPNVHSTSSLNAVPMRSNHELEV 671
+ ++ SS+ G + ++DP+D P D P + + S +++ + +NH V
Sbjct: 165 IPNVTVSSDGGEVELEISDDPYDCHQLPPDQMPIIITLSKVSSTWLSANHYYNV 218
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/80 (27%), Positives = 29/80 (36%)
Frame = +1
Query: 535 TWARPLASGRRIPSTRRPGPRTPARMYTRQVPSTPSQCVPTTN*K*MNRFRCGHDKTNLT 714
T P A + P+ P P TP ST ++ P T H T T
Sbjct: 57 TTPSPTAPTQTTPTPATPTPTTPTPKTPTPTTSTLTKPTPATTPTPTKPTPTAHTPTTPT 116
Query: 715 CTRLITSRPATRTRPVFTTP 774
T ++P +T P TTP
Sbjct: 117 PTAHTPTKPTPKT-PTPTTP 135
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 535 TWARPLASGRRIPSTRRPGPRTPARMYTRQVPSTPS 642
T + P A G I + P TP+ TR PSTPS
Sbjct: 170 TPSTPSAPGTPITPSTLSTPSTPSTPSTRSTPSTPS 205
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 535 TWARPLASGRRIPSTRRPGPRTPARMYTRQVPSTPS 642
T + P A G I + P TP+ TR PSTPS
Sbjct: 720 TPSTPSAPGTPITPSTLSTPSTPSTPSTRSTPSTPS 755
>SB_37253| Best HMM Match : Atrophin-1 (HMM E-Value=0.68)
Length = 1113
Score = 28.3 bits (60), Expect = 7.3
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +3
Query: 327 STKPSTPKRATNQNNVSIIDQPIDVPEIGDGIEWGQQSTESLPTFSVYSGNAQSSMHGAK 506
ST P+ P AT + I V +I +S S+ T S G+A+ + H +
Sbjct: 341 STAPTNPSFATTTVTATSICASTPVTQITPA---PSKSLASVSTLSTV-GSAKINNHSSS 396
Query: 507 SLDSLATSSNVGTSTGQWAEDPFD-ASSWPADTG 605
+ S + TG+W ED A +W + G
Sbjct: 397 TSASKPKKTRKNWITGRWEEDNTTFAEAWLDENG 430
>SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)
Length = 526
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 99 GDAHESAVVL-RKRRTIESTQPSSTRAGNGGSKQFNYNKLINDRALLSGMQRCTRDAYSK 275
G+A ++ + R T+ S++R+G+ S F ++ L NDR+ +R+ ++
Sbjct: 264 GNAAQTMICASRNSHTLSRNDHSTSRSGHSMSYNFQHSTLCNDRSASRNNHSTSRNRHTV 323
Query: 276 S 278
S
Sbjct: 324 S 324
>SB_233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 586 PGPRTPARMYTRQVPSTPSQCVPTTN*K*MNRFRCGHDKTNLTCTRLITSRP 741
P P++ Q P PSQ P+ + MN F+C + T C + +RP
Sbjct: 103 PSQSPPSQSPPSQSP--PSQSPPSQSPPIMNNFQCDKNDTQKRCRAVNFTRP 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,873,146
Number of Sequences: 59808
Number of extensions: 465843
Number of successful extensions: 1894
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1847
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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