Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30807
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31460.1 68414.m03852 expressed protein                             34   0.091
At3g46920.1 68416.m05092 protein kinase family protein similar t...    30   2.0  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    29   3.4  
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ...    29   3.4  
At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden...    29   3.4  
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik...    29   3.4  
At3g17890.1 68416.m02279 expressed protein                             29   4.5  
At3g08670.1 68416.m01007 expressed protein                             29   4.5  
At5g48200.1 68418.m05954 hypothetical protein                          28   6.0  
At4g32340.1 68417.m04603 expressed protein                             28   6.0  
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    28   6.0  
At1g69060.1 68414.m07902 expressed protein                             28   6.0  
At5g06430.1 68418.m00720 thioredoxin-related contains weak simil...    28   7.9  
At1g76900.2 68414.m08950 F-box family protein / tubby family pro...    28   7.9  
At1g76900.1 68414.m08949 F-box family protein / tubby family pro...    28   7.9  
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    28   7.9  

>At1g31460.1 68414.m03852 expressed protein
          Length = 301

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
 Frame = +3

Query: 111 ESAVVLRKRRTIESTQPSSTRAGNGGSKQFNYNKLINDRALLSGMQRCTRDAYSKSLNQV 290
           +S+ + RK+R ++    S     + GS  F+ +  I++  +LS +++ T+    K   ++
Sbjct: 109 DSSNLSRKKRDLDLKSSSQAELVSNGSGDFSDSGNISESKILSPVKQQTKKKLPKEKRRI 168

Query: 291 ---KEDLLIDLDLPPSTKPSTPKRATNQNNVSIIDQ 389
                   IDL  PPST     K++  ++  S  D+
Sbjct: 169 VSPSSSSSIDLATPPSTDSEPEKKSKPKSKSSWFDK 204


>At3g46920.1 68416.m05092 protein kinase family protein similar to
           MAP3K delta-1 protein kinase [Arabidopsis thaliana]
           GI:2253010; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 1171

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
 Frame = +3

Query: 375 SIIDQPIDVPEIGDGIEWGQQSTES-----LPTFSVYSG--NAQSSMHGAKSLDSLATSS 533
           S +D    + E GDG++ GQ+  E+     +   SV SG  N  S   G   +DSL    
Sbjct: 181 SEVDDSFGILEYGDGVDIGQRYVEAVNGVVVSKESVASGSSNPNSDFSGVDVVDSLGVGQ 240

Query: 534 NVGTSTGQWAEDPFDASSWPADTGPNV--HSTSSLNAVPM 647
           +   +T  W    F   ++ ++    V     SS   VPM
Sbjct: 241 SDFVAT-TWTSSNFSPQTYHSNVSRLVPPDPRSSAYVVPM 279


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 445 RAYQRS--QCIRGTLSRVCTVLSHSTVSRRHRTWARPLASGRRIPSTRRPGPRTPARMYT 618
           R+  RS  Q  R +LSR  T LS  ++SR      R   S   + S+R+   R+P R   
Sbjct: 533 RSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSR 592

Query: 619 RQVPSTP 639
           R++  +P
Sbjct: 593 RRISRSP 599


>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
            similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
            GI:7542336; contains Pfam profile PF03810: Importin-beta
            N-terminal domain
          Length = 1112

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 151  DSIVLRFLSTTADSCASPFDNDEFSTDDFAEGE 53
            D   LR L+  A    S  D+D+FS DDF++ E
Sbjct: 1006 DGSTLRKLAAQAKDFRSYSDDDDFSDDDFSDDE 1038


>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
           identical to SEUSS transcriptional co-regulator
           [Arabidopsis thaliana] gi|18033922|gb|AAL57277
          Length = 877

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +3

Query: 453 PTFSVYSGNAQSSMHGAKSLDSLATSSNVGTSTGQWAEDPFDASSW--PADTG-PNVHST 623
           P  S Y GN+   M    S  ++  SS+         + P  +S+   P+  G P+V+  
Sbjct: 675 PPNSPYGGNSVQ-MQSPSSSGTMVPSSSQQQHNLPTFQSPTSSSNNNNPSQNGIPSVNHM 733

Query: 624 SSLNAVPMRSNHELEVNESISMRSRQNE 707
            S N+  M+   E++ NES S++   NE
Sbjct: 734 GSTNSPAMQQAGEVDGNESSSVQKILNE 761


>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
           transposon protein GB:AAB95292 GI:2088658 from
           [Arabidopsis thaliana]
          Length = 1148

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
 Frame = +3

Query: 447 SLPTFSVYSGNAQSSMHGAKSLDSLATSSNVGTSTGQWAEDPFDASSWPADTGPNVHSTS 626
           SLP+  +YSG   SS H      S AT   VG+++       F   +   D  P   S  
Sbjct: 397 SLPSTGIYSGKGSSSYHHIMLRHSTAT---VGSNSSSGQVTGFMPDAKGMDPVPVFQSEV 453

Query: 627 SLNAVPMRSNHELEVN-ESISMRSRQNESHVYSIN 728
              A P +    +     ++S  S ++ESH  S +
Sbjct: 454 ENLAYPDKHEESIAFGMVNLSNESSRHESHESSFS 488


>At3g17890.1 68416.m02279 expressed protein
          Length = 153

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 551 WPVGGGSLRRVVLARGHRPECTLDKFPQRRPNAFQPRTRSK*IDFDAVTTKRISR 715
           W +GG S        G +PE    K  ++RP   Q +T+ K ++  +   KR+ R
Sbjct: 7   WMLGGASTGEAAARNGSQPEAPKTK-AEKRPKRVQ-KTKEKDLNLKSDEPKRVPR 59


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/100 (23%), Positives = 42/100 (42%)
 Frame = +3

Query: 324 PSTKPSTPKRATNQNNVSIIDQPIDVPEIGDGIEWGQQSTESLPTFSVYSGNAQSSMHGA 503
           PST  S P+ + +  N+ I  +P   P           S  +    ++  G A S+    
Sbjct: 244 PSTPTSRPQLSASSPNI-IASRPNSRPSTPTRRSPSSTSLSATSGPTISGGRAASN---G 299

Query: 504 KSLDSLATSSNVGTSTGQWAEDPFDASSWPADTGPNVHST 623
           ++  SL+  S+ G       + P   + +P DT PN+ ++
Sbjct: 300 RTGPSLSRPSSPGPRVRNTPQQPIVLADFPLDTPPNLRTS 339


>At5g48200.1 68418.m05954 hypothetical protein 
          Length = 216

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 111 RARLHSTTTSSVPT-ILPKERVMTFGISSKLDG 16
           + +LHS TTS+ P+ I+ + R  T G SS L G
Sbjct: 122 KEQLHSPTTSATPSLIIHRGRFSTLGSSSSLVG 154


>At4g32340.1 68417.m04603 expressed protein
          Length = 238

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 306 IDLDLPPSTKPSTPKRATNQNNVSIIDQPIDVP---EIGDGIEWGQQSTESL-PTFSVY 470
           +DL+L  + KPS P+  T    VS     +  P      DG  +  QS ES+  T SVY
Sbjct: 9   LDLNLRAAQKPSVPRVVTTARTVSAATPRVAKPITRASSDGNLYKIQSPESITKTISVY 67


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 469 IRGTLSRVCTVLSHSTVSRRHRTWARPLASGRRI-PSTRRPG-PRTPARMYTRQVPSTP 639
           +RGT  R      ++ V  +   W RP A+G  I PS   PG   +PA+   R + S P
Sbjct: 481 LRGTNERSYNGAEYNDVVGKEPNWRRPSANGTGILPSPTGPGILPSPAQGTRRPMRSNP 539


>At1g69060.1 68414.m07902 expressed protein
          Length = 630

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/82 (28%), Positives = 39/82 (47%)
 Frame = +3

Query: 246 QRCTRDAYSKSLNQVKEDLLIDLDLPPSTKPSTPKRATNQNNVSIIDQPIDVPEIGDGIE 425
           +RC+ +   +    V +D +I LD P S+K   P  +  +   SI+ + I + +  D  E
Sbjct: 29  KRCSANGIMEEFILVDDDDVIILDFPESSKRKAPGTSRTRKE-SIMPRVISIDDDDDETE 87

Query: 426 WGQQSTESLPTFSVYSGNAQSS 491
             Q++  S       SGN Q+S
Sbjct: 88  NVQKAGSS------SSGNLQTS 103


>At5g06430.1 68418.m00720 thioredoxin-related contains weak
           similarity to Swiss-Prot:Q9SEU7 thioredoxin M-type 3,
           chloroplast precursor (TRX-M3) [Arabidopsis thaliana]
          Length = 194

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 531 SNVGTSTGQWAEDPFDASSWPADTGPNVHSTSSL 632
           S V T++   ++DPF    WP D+     S+SS+
Sbjct: 3   SKVTTTSSSTSKDPFFCLKWPWDSNKQPKSSSSV 36


>At1g76900.2 68414.m08950 F-box family protein / tubby family
           protein similar to Tubby protein (SP:P50586) {Mus
           musculus}; similar to Chain A, C-Terminal Domain Of
           Mouse Brain Tubby Protein (GI:6730158) [Mus musculus];
           similar to Tubby related protein 1 (Tubby-like protein
           1) (Swiss-Prot:O00294) [Homo sapiens]; similar to
           phosphodiesterase (GI:467578) [Mus musculus]; contains
           Pfam profile: PF01167: Tub family; contains Pfam
           PF00646: F-box domain
          Length = 455

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 5   TQEQPSSFEEIPNVITLSFGKIVGTELVVVEWR 103
           TQ QPS   + P+ I L FGK VG ++  +++R
Sbjct: 401 TQPQPSGQTDGPDKIILQFGK-VGKDMFTMDFR 432


>At1g76900.1 68414.m08949 F-box family protein / tubby family
           protein similar to Tubby protein (SP:P50586) {Mus
           musculus}; similar to Chain A, C-Terminal Domain Of
           Mouse Brain Tubby Protein (GI:6730158) [Mus musculus];
           similar to Tubby related protein 1 (Tubby-like protein
           1) (Swiss-Prot:O00294) [Homo sapiens]; similar to
           phosphodiesterase (GI:467578) [Mus musculus]; contains
           Pfam profile: PF01167: Tub family; contains Pfam
           PF00646: F-box domain
          Length = 455

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 5   TQEQPSSFEEIPNVITLSFGKIVGTELVVVEWR 103
           TQ QPS   + P+ I L FGK VG ++  +++R
Sbjct: 401 TQPQPSGQTDGPDKIILQFGK-VGKDMFTMDFR 432


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 462 SVYSGNAQSSMHGAKS-LDSLATSSNVGTSTGQWAEDPFDASSWPADTGPNVHSTSS 629
           SV SG AQS     +  +D  ATSS+   ++      PF +SS      P V S SS
Sbjct: 157 SVSSGPAQSPASSPRLWIDRFATSSSASATSSSSTSSPFHSSSL-LGFAPAVTSVSS 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,740,130
Number of Sequences: 28952
Number of extensions: 319411
Number of successful extensions: 1252
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)