Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30806
(844 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 99 7e-36
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 31 1.5
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 25 2.5
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21) 30 2.7
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 29 4.7
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 8.2
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 98.7 bits (235), Expect(2) = 7e-36
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1
Query: 43 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 222
T ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 70.5 bits (165), Expect(2) = 7e-36
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +1
Query: 322 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 501
++T+I +DGYL LM DNGD R D+K+ D D+ ++R F++ + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702
Query: 502 VK 507
VK
Sbjct: 703 VK 704
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 8 HEXFLTVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPC 130
H L K KT + T+K +T++P T P+ P +PC
Sbjct: 92 HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 56 TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 190
T+K HT++P T P P N+ P + + +L ++H + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +2
Query: 44 QQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 199
+Q V S P P P PP+PC + PC +T +VVH+ L P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 24.6 bits (51), Expect(2) = 2.5
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 107 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMK 265
+PC ++ C + +S+ V ++K P P TL ++G + +K +K
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVK 450
Score = 23.8 bits (49), Expect(2) = 2.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 89 PGPQPPSPCNVRP 127
PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374
>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
Length = 1049
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -3
Query: 554 NPINAELVYLSRAVF---ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSS 384
NP L Y + A+F + A S QD+ +H NS + N +P+ S I ++
Sbjct: 69 NPSFGPLNYATMAIFPPNTVPAPPQDSTQDYREIHTNSFYFQHQMSNTLPKEES-IQQAD 127
Query: 383 RRSPLSAIRV 354
+P + V
Sbjct: 128 ESAPHDILSV 137
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 23 TVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRP 127
+VV + VT K T +P TP P P P RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNG 252
+ G +M +G+PCKI + K G HG +H+ G D NG
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG 55
>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1226
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 754 GLRARLRNASAK*GGEVLRVTSARGR 677
G R+R+AS K GGE + + SA GR
Sbjct: 334 GCNLRIRSASPKDGGEYMCIVSASGR 359
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 247 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 375
NG Y CP N D + EDY + D YLT D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +1
Query: 274 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 453
P + + V + +++ D + ADN + RE+ + +L ++ T G
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343
Query: 454 LLCTVLKSCGEECVIAVKANTALD 525
T KS GEE V A ++ +LD
Sbjct: 344 SAATYGKSDGEENV-AQESEESLD 366
>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 28.7 bits (61), Expect = 6.2
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 8/131 (6%)
Frame = +1
Query: 67 THFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKT-----GKHGHAKVHLV 231
T E+G + P QC+ + F+ RP + + S ++ G + L
Sbjct: 865 TRRESGQRVSHGLSPKQCAVSVVSSFMDSGARPRRFLPGSQARPRRFLPGSQPRPRRFLP 924
Query: 232 GIDIFNGKKYE--DICPSTHNMDVPHVKREDYQLTDISD-DGYLTLMADNGDLREDLKIP 402
+ + G Y ++ P +D+ + Y++ ++ D YL L D GD LK+
Sbjct: 925 VLKLDPGDFYRVLNLDPGDFYLDLKLDPGDFYRVLNLDPGDFYLDLKLDPGDFYPVLKLD 984
Query: 403 DGDLGTQLRTD 435
GD L+ D
Sbjct: 985 PGDFYPVLKRD 995
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 482 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 351
P+ S V + +LP+ V C+P SPS I RS P VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,994,186
Number of Sequences: 59808
Number of extensions: 560664
Number of successful extensions: 1628
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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