Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30806
(844 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13950.1 68414.m01639 eukaryotic translation initiation facto... 201 5e-52
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 194 6e-50
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 190 1e-48
At3g06450.1 68416.m00746 anion exchange family protein similar t... 32 0.55
At1g56345.1 68414.m06477 pseudouridine synthase family protein l... 29 2.9
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ... 29 3.9
At5g41460.1 68418.m05035 fringe-related protein strong similarit... 29 5.1
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 29 5.1
At3g05830.1 68416.m00654 expressed protein 29 5.1
At3g12240.1 68416.m01527 serine carboxypeptidase S10 family prot... 28 6.8
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro... 28 8.9
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 28 8.9
At3g06490.1 68416.m00753 myb family transcription factor (MYB108... 28 8.9
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 28 8.9
>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Arabidopsis thaliana}
Length = 158
Score = 201 bits (490), Expect = 5e-52
Identities = 87/150 (58%), Positives = 117/150 (78%), Gaps = 1/150 (0%)
Frame = +1
Query: 61 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 240
E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 241 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LG 417
IF KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG ++DLK+P+ D L
Sbjct: 64 IFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLL 123
Query: 418 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 507
Q+++ FD GK+L+ +V+ + GEE + A+K
Sbjct: 124 QQIKSGFDDGKDLVVSVMSAMGEEQINALK 153
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 194 bits (473), Expect = 6e-50
Identities = 85/150 (56%), Positives = 115/150 (76%), Gaps = 1/150 (0%)
Frame = +1
Query: 61 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 240
++ HFE+ D+GAS T+P Q +RK G +++KGRPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 241 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 417
IF KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG ++DLK+P D L
Sbjct: 64 IFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALL 123
Query: 418 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 507
TQL+ F+ GK+++ +V+ + GEE + A+K
Sbjct: 124 TQLKNGFEEGKDIVVSVMSAMGEEQMCALK 153
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 190 bits (462), Expect = 1e-48
Identities = 83/150 (55%), Positives = 111/150 (74%), Gaps = 1/150 (0%)
Frame = +1
Query: 61 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 240
++ HFE +SGAS T+P +RK G +++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 241 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 417
IF KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G ++DLK+P D L
Sbjct: 64 IFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLT 123
Query: 418 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 507
Q+R FD GK+++ +V+ S GEE + AVK
Sbjct: 124 AQMRLGFDEGKDIVVSVMSSMGEEQICAVK 153
>At3g06450.1 68416.m00746 anion exchange family protein similar to
putative Anion exchanger family members: GB:AAD39673,
GB:AAD55295 [Arabidopsis thaliana]
Length = 732
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 704 IASDVSEGEAPRGLRAPPLYYYSFFKLNLYTILC 603
+AS +++ E LR PP Y+Y F L TILC
Sbjct: 316 VASQLAQQE-DFNLRKPPAYHYDLFLLGFLTILC 348
>At1g56345.1 68414.m06477 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 322
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -2
Query: 471 QHGAQQFLAAVEVSTQLCAEVTIRDFEVLTQVTIV-SHQGQVAIIRDISQLVVFALHVGY 295
+HGA + AA++V L +RD E +V V S + + + D++ ++V G
Sbjct: 176 KHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKNESCELEDVNHVIVAE---GE 232
Query: 294 VHVVCGGTD 268
+ CGG D
Sbjct: 233 RELSCGGDD 241
>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 591
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 391 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 492
L IPDGD T L G +C L SCG C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445
>At5g41460.1 68418.m05035 fringe-related protein strong similarity
to unknown protein (pir||T13026) similarity to predicted
proteins + similar to hypothetical protein GB:AAC23643
[Arabidopsis thaliana] + weak similarity to Fringe
[Schistocerca gregaria](GI:6573138);Fringe encodes an
extracellular protein that regulates Notch signalling.
Length = 524
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 26 VVKFKTQQWVTSKTHTSRPETPGPQPPSP 112
++ F T Q K++ S P +P P PP P
Sbjct: 80 LILFHTNQTAVIKSYASPPPSPPPPPPPP 108
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 161 RPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMS 54
+P +T+P +R + A+ PE P++K SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666
>At3g05830.1 68416.m00654 expressed protein
Length = 336
Score = 28.7 bits (61), Expect = 5.1
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +1
Query: 214 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 393
AK + G+D K ED+ P V+ +D ++T + D+ + LM +G +
Sbjct: 186 AKAGIGGMDSELQKLLEDVSPMKFERMNRLVEVKDEEITKLKDE--IRLM--SGQWKHKT 241
Query: 394 KIPDGDLGTQLRTDFDSGKELL 459
K + L Q RTD D K++L
Sbjct: 242 KELESQLEKQRRTDQDLKKKVL 263
>At3g12240.1 68416.m01527 serine carboxypeptidase S10 family protein
contains Pfam profile: PF00450 serine carboxypeptidase;
similar to serine carboxypeptidase I precursor
(SP:P37890) [Oryza sativa]
Length = 436
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = -2
Query: 378 VTIVSHQGQVAIIRDISQL---VVFALHVGYVHVVCGGTD-IFILFTIEDINPNQVNFSV 211
+ ++ H +IIR + + F L GY+ V D +F F + NP + V
Sbjct: 16 LVLIQHADSSSIIRYLPGFEGPLPFELETGYIGVGQKEEDQLFYYFIKSENNPEEDPLLV 75
Query: 210 AVLSGFGCGHFNNLAW 163
+ G GC F+ L +
Sbjct: 76 WLTGGPGCSSFSGLVY 91
>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
protein similar to mavicyanin SP:P80728 from [Cucurbita
pepo]
Length = 310
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 59 SKTHT-SRPETPGPQPPS 109
SKTH SRP TP P PPS
Sbjct: 127 SKTHERSRPITPSPPPPS 144
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 519 SCVCFDGDDALLTAGFQHGA 460
+C+ F GDD+LL +G Q G+
Sbjct: 124 TCLVFSGDDSLLVSGSQDGS 143
>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
identical to transcription factor MYB108 GI:15375290
from [Arabidopsis thaliana]
Length = 323
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 164 HARLLKCPHPKPESTATLKFTWLGLISSMVKSMKIS--VPPHTTWTYPT*SAKTTN 325
HA+ LKC + T+K+ W+ + ++S S TT T T SA T++
Sbjct: 122 HAKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTTGSAGTSS 177
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Frame = +2
Query: 62 KTHTSRPETPGPQPPS---PCNVRPCVKTVSLC*RVVHARLLKCP 187
KT T P PP PCN PC S + + R CP
Sbjct: 22 KTTTKPTAAAAPSPPDIHCPCNAGPCNTVTSKTEKNPNRRFYTCP 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,671,948
Number of Sequences: 28952
Number of extensions: 373756
Number of successful extensions: 1144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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