Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30805
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19)                    126   2e-29
SB_1769| Best HMM Match : PK (HMM E-Value=7.9e-19)                     73   2e-13
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_3182| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)                     30   2.5  
SB_30062| Best HMM Match : Lipase_3 (HMM E-Value=1.7)                  29   4.3  
SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        29   5.7  
SB_26849| Best HMM Match : FlgH (HMM E-Value=7.5)                      29   5.7  
SB_44208| Best HMM Match : DHHA2 (HMM E-Value=8.3)                     28   7.5  
SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8)                28   7.5  
SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)                       28   7.5  
SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.9  

>SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19)
          Length = 211

 Score =  126 bits (304), Expect = 2e-29
 Identities = 60/127 (47%), Positives = 83/127 (65%)
 Frame = +2

Query: 389 RTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGNADTIYVDYKNITNVVKPGNRIFIDDG 568
           R     G    E++L+KG+ +K++T     ++GN + I+VDY+NI  VV+ G  +++DDG
Sbjct: 76  RLNFSHGTHEGEIKLEKGQKLKVSTDKAMYDQGNTECIFVDYENIVKVVQIGGTVYVDDG 135

Query: 569 LISIICQSVSADTLTCTIENGGMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDM 748
           LIS+       + L   + N  +LGS+KGVNLP   VDLPAVSE+DK D+ F VE  VDM
Sbjct: 136 LISLKVLEKGDNFLITEVLNDALLGSKKGVNLPNCAVDLPAVSEQDKKDIAFAVEMEVDM 195

Query: 749 IFASFIR 769
           IFASFIR
Sbjct: 196 IFASFIR 202



 Score = 74.9 bits (176), Expect = 7e-14
 Identities = 32/58 (55%), Positives = 44/58 (75%)
 Frame = +2

Query: 104 SQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHE 277
           S L+    LDID     IR SG++CTIGPASR+V ++ +++E GMN+AR+NFSHG+HE
Sbjct: 28  SNLEFRSELDIDKHPLTIRNSGVVCTIGPASRSVEIVAQLIENGMNIARLNFSHGTHE 85


>SB_1769| Best HMM Match : PK (HMM E-Value=7.9e-19)
          Length = 145

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 35/54 (64%), Positives = 40/54 (74%)
 Frame = +2

Query: 608 LTCTIENGGMLGSRKGVNLPGIPVDLPAVSEKDKSDLLFGVEQGVDMIFASFIR 769
           L   + N  +LGS+KGVNLP   VDLPAVSE+DK D+ F VE  VDMIFASFIR
Sbjct: 9   LITEVLNDALLGSKKGVNLPNCAVDLPAVSEQDKKDIAFAVEMEVDMIFASFIR 62


>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
 Frame = +2

Query: 134 IDSKSSYIRLSGIICTIGPASRNVAVLEKMMET---GMNVARMNFSHGSHEY--HAETIR 298
           ++++ S IR   + C +    R    +++ +E        AR + S    EY  HA+ ++
Sbjct: 302 VEARESRIRT--LECRVDELERQKKKIKEELECVSFNTQAARASKSQLLREYDEHAKEMK 359

Query: 299 NCREAEKSYSAKLGSPFSLAIALDTKGPEI----------RTGLLEGGGSAEVELKKGET 448
              E      A L       +ALDTK  E+            GL E   SA  ELKK E 
Sbjct: 360 RLEEELNKAKASLKDKQDQLLALDTKYKELIADNEGLKDQMRGLRETANSATQELKKKEQ 419

Query: 449 IKLTTSSDYQEKGNAD 496
           +    +++ Q  G+++
Sbjct: 420 LLRALATERQSSGDSE 435


>SB_3182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 668 GIPV-DLPAVSEKDKSDLLFGVEQGVDMI 751
           GIPV  LP   E+DK  LLFG E  VD++
Sbjct: 801 GIPVLTLPGKLERDKKFLLFGEEDAVDVL 829


>SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
 Frame = +2

Query: 197 RNVAVLEKMMETG--MNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLAI-AL 367
           RN A LE+    G  + +AR NF     E  A+T + C E   + ++++       + AL
Sbjct: 155 RNEAALEREQAVGDALAIARKNFERRRKEVIAQTRQQCEEEAATEASRVARLHQQEVGAL 214

Query: 368 DTKGPEIRTGLLEGGGSAEVELKKGETIKLTTSSDYQEKGN 490
           D +  +++  L     S     KK   + L    DY+   N
Sbjct: 215 DQRIDDLKNML----ASERAAAKKLAGVHLALKEDYKRFQN 251


>SB_23275| Best HMM Match : IncA (HMM E-Value=0.43)
          Length = 1176

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 24/209 (11%)
 Frame = +2

Query: 53  GEIEAGAVEKPT-----VANVGSQLQHMCGLDIDSKSSYIRLSGIICTIGPASRNVAVLE 217
           GEI  G VE P      +A  G    + C   + S+ +      II  I      +  L+
Sbjct: 371 GEILPGMVEHPIEKPRFIALRGCAFHNRCN-SLSSEGTVSDGENIILRIPAGQYTIETLK 429

Query: 218 KMMETGMNVARMNFS--HGSHEYHAETIRN----C------REAEKSYSAKLGSPFSLAI 361
           + ++ GM +     S    S E H   + N    C      RE E +   K+ +    AI
Sbjct: 430 RQIDGGMRLGEKPISIRDSSLEVHRNVVLNEPLACLLGLKTRELEANTRHKIKTIGHEAI 489

Query: 362 ALDTKGPEIRTGLLEGGGS---AEVELKKGETIKLTTSSDYQEKGNADTIYVDYKNITNV 532
            +          L +G  S   A VEL +G+     +   +   G+ +     Y+N+   
Sbjct: 490 FIHCDLVNASDSLQQGAPSQILASVELDEGKIYLNPSDPTHDVLGSLEQEVKHYENVRKK 549

Query: 533 VKPGNRIF----IDDGLISIICQSVSADT 607
            K G  +F    +  GLIS+I  S    T
Sbjct: 550 YKRGQSVFSKLSVVLGLISVILGSSGLGT 578


>SB_30062| Best HMM Match : Lipase_3 (HMM E-Value=1.7)
          Length = 160

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
 Frame = -3

Query: 787 VQRGAVADE*RENHINALF-DAEEQVRLV---LLGDCG*VHGYAGQVDAFPGSEHTSVFN 620
           +Q G +  +  E ++  +  +  E+V LV   L G    + G   QV A   S    ++N
Sbjct: 30  LQLGYLVSKVMEQYVQDISGNTTEEVYLVGHSLGGGVAKLVGCRNQVQAISLSSPGEIYN 89

Query: 619 GTRKSVSADRLTDDRDEAIIDEDSVSWLHDIRYVLVVHVNCISIAFL 479
             +   S D + +     I   D V+W+ D    LV +V C   +FL
Sbjct: 90  HGKFGYSLDDIQEYTTSVIAQHDLVTWI-DKHGGLVQYVECDDSSFL 135


>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 634 YARIPERRQPARHTRGPTRSLREGQV 711
           YAR PE RQP+ ++R P  +LRE ++
Sbjct: 30  YAREPEPRQPS-YSRDPDEALRESEL 54


>SB_26849| Best HMM Match : FlgH (HMM E-Value=7.5)
          Length = 317

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 420 AEPPPSKSPVLISGPLVSNAMAKEKGEP 337
           A PPPS+SPV  +G  +S+A   +K +P
Sbjct: 17  ALPPPSESPVWRTGNALSSAKKDKKRQP 44


>SB_44208| Best HMM Match : DHHA2 (HMM E-Value=8.3)
          Length = 289

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 275 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 388
           E HA+   +   A+KSY   L S  +LA  LD   P++
Sbjct: 4   ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 41


>SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 275 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 388
           E HA+   +   A+KSY   L S  +LA  LD   P++
Sbjct: 287 ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 324


>SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8)
          Length = 271

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 633 VCSDPGKASTCPAYPWTYPQSPRRTSRTCSSASNKAL 743
           VC++P  + T   YP T   SP RT +  S++ +KAL
Sbjct: 198 VCTNPPFSPTAAPYPVTIVLSPTRT-KNVSASRHKAL 233


>SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)
          Length = 125

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 275 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 388
           E HA+   +   A+KSY   L S  +LA  LD   P++
Sbjct: 84  ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 121


>SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 275 EYHAETIRNCREAEKSYSAKLGS 343
           E+H E IR  +EA KSY  K GS
Sbjct: 119 EHHEEAIRRHKEALKSYEKKDGS 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,993,387
Number of Sequences: 59808
Number of extensions: 550062
Number of successful extensions: 1772
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1769
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)