Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30800
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054) 31 0.77
SB_52226| Best HMM Match : Cytadhesin_P30 (HMM E-Value=9) 31 1.3
SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_42274| Best HMM Match : Cytadhesin_P30 (HMM E-Value=2.3) 31 1.3
SB_15128| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023) 31 1.3
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_30697| Best HMM Match : Cytadhesin_P30 (HMM E-Value=2.3) 31 1.3
SB_30075| Best HMM Match : zf-CHC2 (HMM E-Value=5.4) 31 1.3
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_59064| Best HMM Match : Adeno_E1A (HMM E-Value=9.3) 30 2.3
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_17989| Best HMM Match : PAN (HMM E-Value=0.00015) 29 3.1
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 29 4.1
SB_20653| Best HMM Match : Sialidase (HMM E-Value=0.35) 29 4.1
SB_4891| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023) 29 5.4
SB_49373| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_56163| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 9.5
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_15073| Best HMM Match : MED7 (HMM E-Value=2.1) 28 9.5
SB_5593| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
Length = 1012
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 278 DGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGS-FSWTSPEGVPISVNYVADEN 454
D + T + NN + QG P G P A G+ ++ P P+ + +
Sbjct: 522 DPAVTRKFPVNNRFQQRRQGAPSGFTGIPQARYQAPTGNPQAYCPPTNNPMFRPFPGNPQ 581
Query: 455 GYQ-PTGNAIPT 487
GYQ PT N +PT
Sbjct: 582 GYQKPTTNQLPT 593
>SB_52226| Best HMM Match : Cytadhesin_P30 (HMM E-Value=9)
Length = 264
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 278 DGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGS-FSWTSPEGVPISVNYVADEN 454
D + T + NN + QG P G P A G+ ++ P P+ + +
Sbjct: 136 DPAVTRKFPVNNRFQQRRQGAPSGSTGIPQARYQAPTGNPQAYCPPTNNPMFRPFPGNPQ 195
Query: 455 GY-QPTGNAIPT 487
GY QPT N +PT
Sbjct: 196 GYQQPTTNQLPT 207
>SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 278 DGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGS-FSWTSPEGVPISVNYVADEN 454
D + T + NN + QG P G P A G+ ++ P P+ + +
Sbjct: 136 DPAVTRKFPVNNRFQQRRQGAPSGSTGIPQARYQAPTGNPQAYCPPTNNPMFRPFPGNPQ 195
Query: 455 GY-QPTGNAIPT 487
GY QPT N +PT
Sbjct: 196 GYQQPTTNQLPT 207
>SB_42274| Best HMM Match : Cytadhesin_P30 (HMM E-Value=2.3)
Length = 239
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 278 DGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGS-FSWTSPEGVPISVNYVADEN 454
D + T + NN + QG P G P A G+ ++ P P+ + +
Sbjct: 136 DPAVTRKFPVNNRFQQRRQGAPSGSTGIPQARYQAPTGNPQAYCPPTNNPMFRPFPGNPQ 195
Query: 455 GY-QPTGNAIPT 487
GY QPT N +PT
Sbjct: 196 GYQQPTTNQLPT 207
>SB_15128| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
Length = 346
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 278 DGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGS-FSWTSPEGVPISVNYVADEN 454
D + T + NN + QG P G P A G+ ++ P P+ + +
Sbjct: 249 DPAVTRKFPVNNRFQQRRQGAPSGSTGIPQARYQAPTGNPQAYCPPTNNPMFRPFPGNPQ 308
Query: 455 GY-QPTGNAIPT 487
GY QPT N +PT
Sbjct: 309 GYQQPTTNQLPT 320
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 278 DGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGS-FSWTSPEGVPISVNYVADEN 454
D + T + NN + QG P G P A G+ ++ P P+ + +
Sbjct: 546 DPAVTRKFPVNNRFQQRRQGAPSGSTGIPQARYQAPTGNPQAYCPPTNNPMFRPFPGNPQ 605
Query: 455 GY-QPTGNAIPT 487
GY QPT N +PT
Sbjct: 606 GYQQPTTNQLPT 617
>SB_30697| Best HMM Match : Cytadhesin_P30 (HMM E-Value=2.3)
Length = 239
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 278 DGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGS-FSWTSPEGVPISVNYVADEN 454
D + T + NN + QG P G P A G+ ++ P P+ + +
Sbjct: 136 DPAVTRKFPVNNRFQQRRQGAPSGSTGIPQARYQAPTGNPQAYCPPTNNPMFRPFPGNPQ 195
Query: 455 GY-QPTGNAIPT 487
GY QPT N +PT
Sbjct: 196 GYQQPTTNQLPT 207
>SB_30075| Best HMM Match : zf-CHC2 (HMM E-Value=5.4)
Length = 335
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 278 DGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGS-FSWTSPEGVPISVNYVADEN 454
D + T + NN + QG P G P A G+ ++ P P+ + +
Sbjct: 232 DPAVTRKFPVNNRFQQRRQGAPSGSTGIPQARYQAPTGNPQAYCPPTNNPMFRPFPGNPQ 291
Query: 455 GY-QPTGNAIPT 487
GY QPT N +PT
Sbjct: 292 GYQQPTTNQLPT 303
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 390 AHSPGHLLKVFPSASITSPTRTDTSPLV-MLSPLPHQCLSRSLVLLPTSPRT 542
A+ P H V SA+ SP+ TDTS +V +S PH ++ + +P T
Sbjct: 2226 ANIPLHSSSVTSSAAFCSPSNTDTSRVVGRVSQAPHNSITSRINESEVAPST 2277
>SB_59064| Best HMM Match : Adeno_E1A (HMM E-Value=9.3)
Length = 336
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 392 SFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQ 508
SF+ S EG P + E+ Q G+ IPTSPPV E+
Sbjct: 67 SFASVSEEGSPAKKIHFERED--QDPGDQIPTSPPVAER 103
>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1047
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +2
Query: 275 PDGSYTYFYETNNGIAAQEQGVPRNLGGN--PPAVPVVAQGSFSWTSPEGVPISVNYVAD 448
P G Y + + G+ Q+ P ++ N PP +P+ A + P +P +
Sbjct: 671 PQGIPYYGPQASGGVIFQQGPYPSHMPANAPPPNIPIQANFPRNIPPPNYIPPTQQMSFQ 730
Query: 449 ENGY-QPTGNAIPTSPPVPE 505
+ Y +P N IPT V E
Sbjct: 731 HSPYNRPPPNVIPTGNMVIE 750
>SB_17989| Best HMM Match : PAN (HMM E-Value=0.00015)
Length = 99
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Frame = +1
Query: 76 CRPSPV*K*ILQE---EPIPVQHI----PAVRSRDHSYSVSAHPDLLYCPRQSSTQ 222
C PS + + L+ + PV+H+ +SRD YS++ H D L C +ST+
Sbjct: 22 CHPSSIDRHQLKGHLLDSFPVEHMHFCFERCKSRDKCYSINFHKDSLVCELNNSTK 77
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -2
Query: 734 TLFTLASKLHTTSITAI*RLKRIYITISMELLTAPVLFS 618
TL+ ASK HT + R RI + S+ +L+A V+F+
Sbjct: 734 TLYVFASKDHTEICLRLTRYSRIVVMYSLLVLSAYVMFT 772
>SB_20653| Best HMM Match : Sialidase (HMM E-Value=0.35)
Length = 572
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 420 FPSASITSPTRTDTSPLVMLSPLPHQCLSRSLVLLPTSP 536
+P + ITS +D S + S LP C + + PT+P
Sbjct: 166 YPRSDITSMANSDVSSGAIYSSLPSVCPPKGTHMTPTAP 204
>SB_4891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +1
Query: 115 EPIPVQHI----PAVRSRDHSYSVSAHPDLLYCPRQSSTQ 222
+ PV+H+ +SRD YS++ H D L C +ST+
Sbjct: 42 DSFPVEHMHFCFERCKSRDKCYSINFHKDSLVCELNNSTK 81
>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
Length = 836
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 278 DGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGS-FSWTSPEGVPISVNYVADEN 454
D + T + NN + QG P G P A G+ ++ P P+ + +
Sbjct: 229 DPAVTRKFPVNNRFQQRRQGAPSGSTGIPQARYQAPTGNPQAYCPPTYNPMFRPFPDNPQ 288
Query: 455 GY-QPTGNAIPT 487
GY QPT N +PT
Sbjct: 289 GYQQPTTNQLPT 300
>SB_49373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 372 FPSLHRAHSPGHLLKVFPSASITSPT--RTDTSPLVMLSPLPHQCLSR 509
F L +AH+P H+L VFP+ T + + P V++ +C +R
Sbjct: 3 FLYLSQAHTPPHILLVFPAKKCNRGTLSKNWSGPTVLIELAKGKCQTR 50
>SB_56163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 356 GNPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPP 496
GNPP PV +F + P + Y A + P G ++P PP
Sbjct: 105 GNPPYPPVDQYSAFPY--PPQDQQAPPYPAQNQYWNPQGTSLPPPPP 149
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 356 GNPPAVPVVA--QGSFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 493
G PA P + S+S TSP P S +Y Y PT + PTSP
Sbjct: 448 GYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 496
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 449 ENGYQPTGNAIPTSPPVPEQ 508
EN YQP P SPP P+Q
Sbjct: 117 ENSYQPVELFAPNSPPKPQQ 136
>SB_15073| Best HMM Match : MED7 (HMM E-Value=2.1)
Length = 644
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 353 GGNPPAVPVVAQGSFSWTSPEGVPISVNYVADENGY 460
G P +PV + + W G PIS+N N Y
Sbjct: 146 GSLPDYIPVYSPETIVWGQSSGAPISINSSVIVNAY 181
>SB_5593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 371 VPVVAQGSFSWTSPEGVPISVNYVADENGY 460
+PV + G+ W G PIS+N N Y
Sbjct: 171 IPVYSPGTIVWGQSSGAPISINSSLIVNAY 200
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,569,446
Number of Sequences: 59808
Number of extensions: 542236
Number of successful extensions: 1536
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -