Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30799
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 32 0.079
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 29 0.97
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 1.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.2
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 27 2.2
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 27 3.0
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 27 3.9
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 27 3.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 6.9
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 26 6.9
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.1
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 25 9.1
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 32.3 bits (70), Expect = 0.079
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +2
Query: 125 SRQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTP--EEIVVKTVDNKLLVHAKHEE 298
SRQ++ + W +++ L D +L +++ S P E + K L AK
Sbjct: 235 SRQVSAHNFWPKISASLGFPSPDAISLLIQYYNSYLLPYEEAWLAAQQQQKSLQQAKANH 294
Query: 299 KSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTVEAPLP 427
++ +S + Y ++ P T PEA+ ++ S G L ++P P
Sbjct: 295 SANVQSRPKNYPQK---PVQTTPEAVHANGSMHGSLHSKSPSP 334
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 28.7 bits (61), Expect = 0.97
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -3
Query: 381 DLMASGFVPLGNKNSLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSG 235
+L + G P+G+ +S++ +L TDF +++ + + S LS T +S G
Sbjct: 327 ELHSLGDTPVGDNSSIVLNLITDFCNEYRTVVDGRSEELSA--TELSGG 373
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 342 FCCPREQILR--PLSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 491
F CP L P++L C GTVC R+ ++S S SR +H P
Sbjct: 17 FICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCFYNHKKP 68
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.2
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +3
Query: 42 SDQNS*TEKATISSRAQLARRHLHSIVTADSLP-SPVTGIA*TRRSFKTRVTARLSSFAL 218
S NS T AT +S L+ + + +A S P S V T S T +T+ ++S
Sbjct: 426 SSANSTT--ATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSAS-STPLTS-VNSTTA 481
Query: 219 MSASILPKRSLLRLSTTNYWSTPNTRRNLIRNLCTENTTGSF 344
SAS P S+ S T+ STP T N + +T S+
Sbjct: 482 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 27.5 bits (58), Expect = 2.2
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Frame = +2
Query: 149 HWDSLNSPLIQDEG---DGKTLKLRFDVSQYTPEEI-----VVKTVDNKLLVHAKHEEKS 304
+++S P+ DEG D + + RF + + I ++ V + + + H ++S
Sbjct: 305 NFNSYIKPVAGDEGRVEDEEFEENRFSIEDIEIDSIPAVRRLLGDVMSDIPYYMSHHKES 364
Query: 305 DTKSVYREYNREFLLPKGTNP 367
KSV RE NR + L K NP
Sbjct: 365 IIKSVIREANRVYHLWKDCNP 385
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 27.1 bits (57), Expect = 3.0
Identities = 23/83 (27%), Positives = 39/83 (46%)
Frame = +2
Query: 218 DVSQYTPEEIVVKTVDNKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRD 397
D S T EE+V + D K L K+D +S + E ++ ++ + +P ++ SLS D
Sbjct: 109 DHSSDTEEEVVSE--DQKQL------NKTDDESTFIESHQIYIQGETKSPSSVSQSLSGD 160
Query: 398 GVLTVEAPLPQLAITDRNIPIQK 466
L + + N PI+K
Sbjct: 161 PSLKPAEVFDRKQSAEINSPIEK 183
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 275 LVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTVEA-PLPQL 433
L H HE D +S+YR R L + E + S S + +LTV + P P L
Sbjct: 49 LAHKVHE---DVESIYRRLERLQLCKRNEEEEMLNSDAS-EAMLTVSSVPSPTL 98
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 300 NLIRNLCTENTTGSFCCPREQILRPLSLRCPGTVCLPWK--RHCHNSPSRTGTFLSRS 467
+L+ C E + +I R L +C G LP + +H H++P R+ S+S
Sbjct: 391 DLLLKFCKETIVPYYSSKFPRITRNLLEKCNGLDLLPERSHKHRHSAPPRSKLISSKS 448
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.9
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Frame = -3
Query: 447 LSVMASCGNGASTVSTPSR-----DSEDLMASGFVPLGNKN----SLLYSLYTDFVSDFS 295
+S +S + ST+ST S S L S +P + + S++ S T +S S
Sbjct: 484 ISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSS 543
Query: 294 SCLAWTSNLLSTVLTTISSGV 232
S +S+ S+ +TTISSG+
Sbjct: 544 SIPTSSSSDFSSSITTISSGI 564
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 6.9
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 221 VSQYTPEEIVVKTVDNKLLVHAKHEEKS-DTKSVYREYNREFLLPKGTNPEAIKSSL 388
V TP + V DNK LV K EK + +S E +E K T PE + +L
Sbjct: 1347 VPDSTPSDAVASETDNKNLVENKAVEKRVEARSSANERKQEERRRK-TTPEGNRRAL 1402
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 402 CLPWKRHCHNSPSRTGTFLSRSTERSHH 485
CL W RH +S SR+G ++H
Sbjct: 268 CLSWNRHVLSSGSRSGAIHHHDVRIANH 295
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 155 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 271
+S+ SP + EG +LK R + TP+ + T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 417 RHCHNSPSRTGTFLSRSTERSHHSPRVH*GSRYSITVNNLF 539
R CHNS +R+ F+S + V+ Y+ +NN+F
Sbjct: 131 RCCHNSFARSDPFISEEVRAATDEDEVYHFIAYT-NINNVF 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,043
Number of Sequences: 5004
Number of extensions: 60383
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -