Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30799
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    36   0.030
At4g27670.1 68417.m03979 25.3 kDa small heat shock protein, chlo...    35   0.052
At1g35515.1 68414.m04409 myb family transcription factor (MYB8) ...    33   0.28 
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    29   3.4  
At5g45270.1 68418.m05556 WRKY family transcription factor contai...    28   5.9  
At5g20260.1 68418.m02412 exostosin family protein contains Pfam ...    28   7.9  
At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identica...    28   7.9  
At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identica...    28   7.9  

>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
 Frame = +2

Query: 218 DVSQYTPEEIVVKTVDNKLLV-----HAKHEEKSDT-KSVYR---EYNREFLLPKGTNPE 370
           D+     EE+ V+  D+ +L      H + EEK DT   V R   +++R+F LP+    +
Sbjct: 64  DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMD 123

Query: 371 AIKSSLSRDGVLTVEAP 421
            +K+S+  +GVLTV  P
Sbjct: 124 QVKASM-ENGVLTVTVP 139


>At4g27670.1 68417.m03979 25.3 kDa small heat shock protein,
           chloroplast precursor (HSP25.3-P) identical to small
           heat shock protein, chloroplast precursor SP:P31170 from
           [Arabidopsis thaliana]; identified in Scharf, K-D., et
           al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 227

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +2

Query: 203 LKLRFDVSQYTPEEIVVKTVDNKLLV--HAKHEEKSDTKS--VYREYNREFLLPKGTNPE 370
           +K+RFD+   + E++ +   DN L++    K E+  D+ S      Y     LP     +
Sbjct: 138 IKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKD 197

Query: 371 AIKSSLSRDGVLTVEAP 421
            IK+ L ++GVL +  P
Sbjct: 198 KIKAEL-KNGVLFITIP 213


>At1g35515.1 68414.m04409 myb family transcription factor (MYB8)
           similar to DNA-binding protein GB:AAA98761 GI:1020155
           from [Arabidopsis thaliana]
          Length = 212

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +3

Query: 270 NYWSTPNTRRNLIRNLCTENTTGSFCCPREQILRP----LSLRCPGTVCLPWKRHCHNSP 437
           NYW+T + +R L+       T GS   P+     P    L    PG+V L  +  C N  
Sbjct: 106 NYWNT-HIKRKLLNRGIDPKTHGSIIEPKTTSFHPRNEDLKSTFPGSVKLKMETSCENCA 164

Query: 438 SRTGT 452
           S +GT
Sbjct: 165 STSGT 169


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
           to CREB-binding protein GB:AAC51770 GI:2443859 from
           [Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
           profile; contains Pfam PF00569: Zinc finger, ZZ type
           domain; identical to histone acetyltransferase HAC4
           (GI:14794966) {Arabidopsis thaliana}
          Length = 1456

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 189 VTARLSSFALMSASILPKRSLLR-LSTTNYWSTPNTRRNL 305
           VT+  S+   M  + LPKR L   L  TN+ S PN R NL
Sbjct: 315 VTSYHSNLQPMQQTPLPKRQLHHPLWNTNFQSAPNNRDNL 354


>At5g45270.1 68418.m05556 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 114

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 445 VRDGELWQWRFHGKHTVPGQRRLNGLRICS 356
           + +G+LW WR +G+  + G R   G   C+
Sbjct: 31  IDEGDLWTWRKYGQKDILGSRFPRGYYRCA 60


>At5g20260.1 68418.m02412 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 334

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 279 STPNTRRNLIRNLCTENTTGSFCCPREQILRPLSLRCPG 395
           S P   +NLIR LC  NT+  F  P+  +  P  +  PG
Sbjct: 121 SNPELMKNLIRVLCNANTSEGF-MPQRDVSIP-EINIPG 157


>At1g59750.2 68414.m06728 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 662

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 230 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 313
           YTPEE+   +  NKL V+A+ + K+D +
Sbjct: 619 YTPEEVKKLSPKNKLAVNARMQLKADAE 646


>At1g59750.1 68414.m06727 auxin-responsive factor (ARF1) identical
           to auxin response factor 1 GI:2245378 from [Arabidopsis
           thaliana]
          Length = 665

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 230 YTPEEIVVKTVDNKLLVHAKHEEKSDTK 313
           YTPEE+   +  NKL V+A+ + K+D +
Sbjct: 622 YTPEEVKKLSPKNKLAVNARMQLKADAE 649


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,048,634
Number of Sequences: 28952
Number of extensions: 306520
Number of successful extensions: 963
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)